Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1266 and Dshi_1267 overlap by 4 nucleotides Dshi_1267 and Dshi_1268 are separated by 3 nucleotides Dshi_1268 and Dshi_1269 overlap by 4 nucleotides
Dshi_1266: Dshi_1266 - ketose-bisphosphate aldolase (RefSeq), at 1,315,135 to 1,315,977
_1266
Dshi_1267: Dshi_1267 - hypothetical protein (RefSeq), at 1,315,974 to 1,316,834
_1267
Dshi_1268: Dshi_1268 - PfkB domain protein (RefSeq), at 1,316,838 to 1,317,839
_1268
Dshi_1269: Dshi_1269 - thiamine pyrophosphate protein central region (RefSeq), at 1,317,836 to 1,319,701
_1269
Position (kb)
1316
1317
1318 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1315.915 kb on + strand at 1315.920 kb on + strand at 1315.928 kb on - strand at 1316.027 kb on - strand at 1316.074 kb on - strand, within Dshi_1267 at 1316.131 kb on - strand, within Dshi_1267 at 1316.216 kb on + strand, within Dshi_1267 at 1316.266 kb on - strand, within Dshi_1267 at 1316.277 kb on - strand, within Dshi_1267 at 1316.316 kb on - strand, within Dshi_1267 at 1316.325 kb on + strand, within Dshi_1267 at 1316.352 kb on - strand, within Dshi_1267 at 1316.372 kb on + strand, within Dshi_1267 at 1316.434 kb on + strand, within Dshi_1267 at 1316.473 kb on - strand, within Dshi_1267 at 1316.560 kb on - strand, within Dshi_1267 at 1316.590 kb on - strand, within Dshi_1267 at 1316.675 kb on + strand, within Dshi_1267 at 1316.706 kb on + strand, within Dshi_1267 at 1316.714 kb on - strand, within Dshi_1267 at 1316.822 kb on - strand at 1316.836 kb on + strand at 1316.934 kb on - strand at 1317.079 kb on + strand, within Dshi_1268 at 1317.157 kb on + strand, within Dshi_1268 at 1317.180 kb on + strand, within Dshi_1268 at 1317.365 kb on + strand, within Dshi_1268 at 1317.371 kb on + strand, within Dshi_1268 at 1317.371 kb on + strand, within Dshi_1268 at 1317.397 kb on - strand, within Dshi_1268 at 1317.402 kb on + strand, within Dshi_1268 at 1317.448 kb on + strand, within Dshi_1268 at 1317.503 kb on - strand, within Dshi_1268 at 1317.513 kb on - strand, within Dshi_1268 at 1317.736 kb on - strand, within Dshi_1268 at 1317.911 kb on + strand at 1317.923 kb on + strand at 1317.923 kb on + strand at 1317.929 kb on - strand at 1318.019 kb on + strand at 1318.025 kb on - strand, within Dshi_1269 at 1318.025 kb on - strand, within Dshi_1269 at 1318.052 kb on - strand, within Dshi_1269 at 1318.141 kb on - strand, within Dshi_1269 at 1318.164 kb on + strand, within Dshi_1269 at 1318.235 kb on + strand, within Dshi_1269 at 1318.322 kb on - strand, within Dshi_1269 at 1318.333 kb on - strand, within Dshi_1269 at 1318.529 kb on - strand, within Dshi_1269 at 1318.741 kb on + strand, within Dshi_1269 at 1318.833 kb on - strand, within Dshi_1269
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 1,315,915 + +0.1 1,315,920 + -0.1 1,315,928 - +3.3 1,316,027 - +1.1 1,316,074 - Dshi_1267 0.12 +1.6 1,316,131 - Dshi_1267 0.18 +0.3 1,316,216 + Dshi_1267 0.28 +1.9 1,316,266 - Dshi_1267 0.34 -0.8 1,316,277 - Dshi_1267 0.35 +1.7 1,316,316 - Dshi_1267 0.40 -0.5 1,316,325 + Dshi_1267 0.41 -0.7 1,316,352 - Dshi_1267 0.44 +0.2 1,316,372 + Dshi_1267 0.46 -0.2 1,316,434 + Dshi_1267 0.53 -1.4 1,316,473 - Dshi_1267 0.58 -0.7 1,316,560 - Dshi_1267 0.68 -2.6 1,316,590 - Dshi_1267 0.72 +0.3 1,316,675 + Dshi_1267 0.81 -0.3 1,316,706 + Dshi_1267 0.85 -2.0 1,316,714 - Dshi_1267 0.86 -2.7 1,316,822 - -0.3 1,316,836 + -2.5 1,316,934 - -1.5 1,317,079 + Dshi_1268 0.24 -0.2 1,317,157 + Dshi_1268 0.32 +0.3 1,317,180 + Dshi_1268 0.34 -0.7 1,317,365 + Dshi_1268 0.53 +0.3 1,317,371 + Dshi_1268 0.53 -1.5 1,317,371 + Dshi_1268 0.53 -0.4 1,317,397 - Dshi_1268 0.56 -0.1 1,317,402 + Dshi_1268 0.56 +0.6 1,317,448 + Dshi_1268 0.61 +0.9 1,317,503 - Dshi_1268 0.66 -0.7 1,317,513 - Dshi_1268 0.67 +0.3 1,317,736 - Dshi_1268 0.90 -0.7 1,317,911 + -1.2 1,317,923 + -1.0 1,317,923 + -0.0 1,317,929 - -1.7 1,318,019 + +0.2 1,318,025 - Dshi_1269 0.10 -1.0 1,318,025 - Dshi_1269 0.10 -3.6 1,318,052 - Dshi_1269 0.12 +0.5 1,318,141 - Dshi_1269 0.16 -0.7 1,318,164 + Dshi_1269 0.18 +0.3 1,318,235 + Dshi_1269 0.21 +2.7 1,318,322 - Dshi_1269 0.26 +0.0 1,318,333 - Dshi_1269 0.27 -1.5 1,318,529 - Dshi_1269 0.37 -0.3 1,318,741 + Dshi_1269 0.48 -0.1 1,318,833 - Dshi_1269 0.53 -0.4
Or see this region's nucleotide sequence