Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1045
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,078,232 | + | -0.6 | |||
1,078,270 | + | +1.2 | |||
1,078,334 | + | +0.4 | |||
1,078,342 | - | +0.8 | |||
1,078,556 | - | Dshi_1044 | 0.29 | -1.2 | |
1,078,612 | - | Dshi_1044 | 0.37 | -2.0 | |
1,078,630 | - | Dshi_1044 | 0.40 | +0.1 | |
1,078,679 | - | Dshi_1044 | 0.47 | -0.6 | |
1,078,735 | + | Dshi_1044 | 0.55 | +1.2 | |
1,078,803 | - | Dshi_1044 | 0.64 | -1.6 | |
1,078,933 | + | Dshi_1044 | 0.83 | -1.2 | |
1,078,978 | + | Dshi_1044 | 0.89 | -0.6 | |
1,079,034 | + | +0.4 | |||
1,079,246 | + | Dshi_1045 | 0.23 | -1.5 | |
1,079,782 | + | Dshi_1045 | 0.86 | +0.9 | |
1,079,795 | + | Dshi_1045 | 0.88 | -1.2 | |
1,079,802 | + | Dshi_1045 | 0.89 | -2.0 | |
1,079,949 | + | -1.1 | |||
1,079,956 | + | -1.5 | |||
1,080,076 | - | Dshi_1046 | 0.16 | +1.4 | |
1,080,286 | + | Dshi_1046 | 0.35 | +1.4 | |
1,080,383 | + | Dshi_1046 | 0.43 | -0.1 | |
1,080,421 | - | Dshi_1046 | 0.47 | -2.5 | |
1,080,531 | - | Dshi_1046 | 0.56 | -0.6 | |
1,080,656 | - | Dshi_1046 | 0.67 | -2.3 | |
1,080,895 | + | Dshi_1046 | 0.89 | +2.7 |
Or see this region's nucleotide sequence