Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0916 and Dshi_0917 are separated by 10 nucleotides Dshi_0917 and Dshi_0918 are separated by 250 nucleotides
Dshi_0916: Dshi_0916 - efflux transporter, RND family, MFP subunit (RefSeq), at 937,856 to 939,046
_0916
Dshi_0917: Dshi_0917 - acriflavin resistance protein (RefSeq), at 939,057 to 942,221
_0917
Dshi_0918: Dshi_0918 - Auxin Efflux Carrier (RefSeq), at 942,472 to 943,404
_0918
Position (kb) 939
940
941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.231 kb on + strand, within Dshi_0916 at 938.316 kb on - strand, within Dshi_0916 at 938.319 kb on + strand, within Dshi_0916 at 938.670 kb on - strand, within Dshi_0916 at 938.712 kb on - strand, within Dshi_0916 at 938.718 kb on + strand, within Dshi_0916 at 938.783 kb on + strand, within Dshi_0916 at 938.784 kb on - strand, within Dshi_0916 at 938.791 kb on + strand, within Dshi_0916 at 938.854 kb on + strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.876 kb on + strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 939.042 kb on + strand at 939.055 kb on + strand at 939.184 kb on - strand at 939.214 kb on + strand at 939.265 kb on - strand at 939.538 kb on - strand, within Dshi_0917 at 939.563 kb on + strand, within Dshi_0917 at 939.571 kb on - strand, within Dshi_0917 at 939.641 kb on + strand, within Dshi_0917 at 939.660 kb on - strand, within Dshi_0917 at 939.708 kb on + strand, within Dshi_0917 at 939.757 kb on - strand, within Dshi_0917 at 940.024 kb on + strand, within Dshi_0917 at 940.149 kb on - strand, within Dshi_0917 at 940.178 kb on + strand, within Dshi_0917 at 940.351 kb on + strand, within Dshi_0917 at 940.399 kb on + strand, within Dshi_0917 at 940.405 kb on - strand, within Dshi_0917 at 940.412 kb on - strand, within Dshi_0917 at 940.574 kb on + strand, within Dshi_0917 at 940.611 kb on - strand, within Dshi_0917 at 940.803 kb on + strand, within Dshi_0917 at 940.957 kb on + strand, within Dshi_0917 at 941.058 kb on - strand, within Dshi_0917 at 941.119 kb on - strand, within Dshi_0917 at 941.205 kb on - strand, within Dshi_0917 at 941.421 kb on - strand, within Dshi_0917 at 941.524 kb on + strand, within Dshi_0917 at 941.532 kb on - strand, within Dshi_0917 at 941.671 kb on + strand, within Dshi_0917 at 941.795 kb on + strand, within Dshi_0917 at 941.800 kb on + strand, within Dshi_0917 at 941.945 kb on + strand at 942.188 kb on - strand at 942.310 kb on + strand at 942.318 kb on - strand at 942.425 kb on - strand at 942.478 kb on - strand at 942.580 kb on + strand, within Dshi_0918 at 942.702 kb on + strand, within Dshi_0918 at 942.761 kb on + strand, within Dshi_0918 at 942.833 kb on + strand, within Dshi_0918 at 942.901 kb on + strand, within Dshi_0918 at 942.984 kb on + strand, within Dshi_0918 at 943.055 kb on + strand, within Dshi_0918
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 938,231 + Dshi_0916 0.31 -0.6 938,316 - Dshi_0916 0.39 +0.4 938,319 + Dshi_0916 0.39 -1.4 938,670 - Dshi_0916 0.68 +0.4 938,712 - Dshi_0916 0.72 -1.1 938,718 + Dshi_0916 0.72 -1.1 938,783 + Dshi_0916 0.78 +0.4 938,784 - Dshi_0916 0.78 -0.1 938,791 + Dshi_0916 0.79 +1.0 938,854 + Dshi_0916 0.84 -0.7 938,862 - Dshi_0916 0.84 +0.4 938,862 - Dshi_0916 0.84 +0.2 938,876 + Dshi_0916 0.86 -0.4 938,894 - Dshi_0916 0.87 -0.1 938,894 - Dshi_0916 0.87 +3.0 939,042 + -0.6 939,055 + -1.3 939,184 - -1.1 939,214 + +0.0 939,265 - +0.4 939,538 - Dshi_0917 0.15 -3.3 939,563 + Dshi_0917 0.16 -1.4 939,571 - Dshi_0917 0.16 -0.4 939,641 + Dshi_0917 0.18 -0.6 939,660 - Dshi_0917 0.19 -2.1 939,708 + Dshi_0917 0.21 -0.9 939,757 - Dshi_0917 0.22 +2.4 940,024 + Dshi_0917 0.31 -0.6 940,149 - Dshi_0917 0.35 +2.4 940,178 + Dshi_0917 0.35 -1.4 940,351 + Dshi_0917 0.41 -2.2 940,399 + Dshi_0917 0.42 -1.1 940,405 - Dshi_0917 0.43 +0.4 940,412 - Dshi_0917 0.43 -1.9 940,574 + Dshi_0917 0.48 -1.0 940,611 - Dshi_0917 0.49 +2.8 940,803 + Dshi_0917 0.55 +0.3 940,957 + Dshi_0917 0.60 +0.4 941,058 - Dshi_0917 0.63 +2.4 941,119 - Dshi_0917 0.65 -0.0 941,205 - Dshi_0917 0.68 -0.3 941,421 - Dshi_0917 0.75 -2.6 941,524 + Dshi_0917 0.78 +0.9 941,532 - Dshi_0917 0.78 -1.5 941,671 + Dshi_0917 0.83 +1.5 941,795 + Dshi_0917 0.87 +0.3 941,800 + Dshi_0917 0.87 -0.4 941,945 + +1.4 942,188 - -0.3 942,310 + -0.5 942,318 - -0.6 942,425 - +0.4 942,478 - -1.2 942,580 + Dshi_0918 0.12 -0.4 942,702 + Dshi_0918 0.25 +0.2 942,761 + Dshi_0918 0.31 -0.7 942,833 + Dshi_0918 0.39 +0.4 942,901 + Dshi_0918 0.46 +0.0 942,984 + Dshi_0918 0.55 -0.9 943,055 + Dshi_0918 0.62 -0.7
Or see this region's nucleotide sequence