Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0913 and Dshi_0914 overlap by 17 nucleotides Dshi_0914 and Dshi_0915 overlap by 4 nucleotides Dshi_0915 and Dshi_0916 are separated by 271 nucleotides
Dshi_0913: Dshi_0913 - thiamine biosynthesis protein ThiS (RefSeq), at 935,635 to 935,829
_0913
Dshi_0914: Dshi_0914 - glycine oxidase ThiO (RefSeq), at 935,813 to 936,790
_0914
Dshi_0915: Dshi_0915 - phosphomethylpyrimidine kinase (RefSeq), at 936,787 to 937,584
_0915
Dshi_0916: Dshi_0916 - efflux transporter, RND family, MFP subunit (RefSeq), at 937,856 to 939,046
_0916
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 935.884 kb on + strand at 936.063 kb on - strand, within Dshi_0914 at 936.195 kb on - strand, within Dshi_0914 at 936.394 kb on - strand, within Dshi_0914 at 936.573 kb on + strand, within Dshi_0914 at 936.607 kb on - strand, within Dshi_0914 at 936.668 kb on + strand, within Dshi_0914 at 936.885 kb on - strand, within Dshi_0915 at 936.914 kb on + strand, within Dshi_0915 at 937.069 kb on + strand, within Dshi_0915 at 937.166 kb on + strand, within Dshi_0915 at 937.176 kb on + strand, within Dshi_0915 at 937.209 kb on - strand, within Dshi_0915 at 937.335 kb on + strand, within Dshi_0915 at 937.348 kb on - strand, within Dshi_0915 at 937.477 kb on + strand, within Dshi_0915 at 937.621 kb on - strand at 937.785 kb on - strand at 937.826 kb on + strand at 937.852 kb on + strand at 937.907 kb on - strand at 937.968 kb on - strand at 938.014 kb on + strand, within Dshi_0916 at 938.231 kb on + strand, within Dshi_0916 at 938.316 kb on - strand, within Dshi_0916 at 938.319 kb on + strand, within Dshi_0916
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 935,884 + +2.4 936,063 - Dshi_0914 0.26 -0.6 936,195 - Dshi_0914 0.39 -1.1 936,394 - Dshi_0914 0.59 +0.4 936,573 + Dshi_0914 0.78 -2.9 936,607 - Dshi_0914 0.81 -0.6 936,668 + Dshi_0914 0.87 -2.1 936,885 - Dshi_0915 0.12 -1.1 936,914 + Dshi_0915 0.16 +0.4 937,069 + Dshi_0915 0.35 +2.0 937,166 + Dshi_0915 0.47 -0.2 937,176 + Dshi_0915 0.49 -2.4 937,209 - Dshi_0915 0.53 +0.4 937,335 + Dshi_0915 0.69 +0.4 937,348 - Dshi_0915 0.70 +1.4 937,477 + Dshi_0915 0.86 +2.4 937,621 - -0.1 937,785 - +2.0 937,826 + +0.4 937,852 + +0.1 937,907 - +1.4 937,968 - -2.1 938,014 + Dshi_0916 0.13 +1.4 938,231 + Dshi_0916 0.31 -0.6 938,316 - Dshi_0916 0.39 +0.4 938,319 + Dshi_0916 0.39 -1.4
Or see this region's nucleotide sequence