Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0856 and Dshi_0857 are separated by 8 nucleotides Dshi_0857 and Dshi_0858 are separated by 255 nucleotides Dshi_0858 and Dshi_0859 overlap by 4 nucleotides
Dshi_0856: Dshi_0856 - protein of unknown function DUF404 (RefSeq), at 868,179 to 870,593
_0856
Dshi_0857: Dshi_0857 - transglutaminase domain protein (RefSeq), at 870,602 to 873,940
_0857
Dshi_0858: Dshi_0858 - ABC transporter related (RefSeq), at 874,196 to 874,888
_0858
Dshi_0859: Dshi_0859 - ABC transporter related (RefSeq), at 874,885 to 875,637
_0859
Position (kb) 870
871
872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 869.648 kb on + strand, within Dshi_0856 at 869.835 kb on - strand, within Dshi_0856 at 869.874 kb on - strand, within Dshi_0856 at 869.877 kb on + strand, within Dshi_0856 at 869.877 kb on + strand, within Dshi_0856 at 870.051 kb on + strand, within Dshi_0856 at 870.285 kb on - strand, within Dshi_0856 at 870.382 kb on - strand at 870.397 kb on - strand at 870.449 kb on - strand at 870.532 kb on - strand at 870.597 kb on - strand at 870.625 kb on + strand at 871.289 kb on + strand, within Dshi_0857 at 871.693 kb on + strand, within Dshi_0857 at 871.744 kb on - strand, within Dshi_0857 at 871.770 kb on - strand, within Dshi_0857 at 871.787 kb on + strand, within Dshi_0857 at 871.878 kb on + strand, within Dshi_0857 at 871.989 kb on + strand, within Dshi_0857 at 872.149 kb on - strand, within Dshi_0857 at 872.233 kb on + strand, within Dshi_0857 at 872.289 kb on + strand, within Dshi_0857 at 872.296 kb on - strand, within Dshi_0857 at 872.446 kb on - strand, within Dshi_0857 at 872.461 kb on - strand, within Dshi_0857 at 872.507 kb on - strand, within Dshi_0857 at 872.776 kb on - strand, within Dshi_0857 at 872.803 kb on + strand, within Dshi_0857 at 872.877 kb on - strand, within Dshi_0857 at 872.959 kb on - strand, within Dshi_0857 at 873.148 kb on + strand, within Dshi_0857 at 873.283 kb on + strand, within Dshi_0857 at 873.344 kb on - strand, within Dshi_0857 at 873.385 kb on + strand, within Dshi_0857 at 873.420 kb on + strand, within Dshi_0857 at 873.436 kb on - strand, within Dshi_0857 at 873.459 kb on - strand, within Dshi_0857 at 873.596 kb on + strand, within Dshi_0857 at 873.787 kb on + strand at 873.819 kb on + strand at 873.954 kb on - strand at 874.060 kb on - strand at 874.102 kb on + strand at 874.159 kb on + strand at 874.259 kb on - strand at 874.259 kb on - strand at 874.260 kb on + strand at 874.268 kb on - strand, within Dshi_0858 at 874.414 kb on - strand, within Dshi_0858
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 869,648 + Dshi_0856 0.61 -0.1 869,835 - Dshi_0856 0.69 -2.0 869,874 - Dshi_0856 0.70 -0.9 869,877 + Dshi_0856 0.70 -0.5 869,877 + Dshi_0856 0.70 +0.5 870,051 + Dshi_0856 0.78 -1.6 870,285 - Dshi_0856 0.87 -0.4 870,382 - -1.0 870,397 - -3.0 870,449 - -0.0 870,532 - +2.5 870,597 - -0.1 870,625 + -0.9 871,289 + Dshi_0857 0.21 -1.6 871,693 + Dshi_0857 0.33 -0.6 871,744 - Dshi_0857 0.34 -1.1 871,770 - Dshi_0857 0.35 -1.9 871,787 + Dshi_0857 0.35 -1.1 871,878 + Dshi_0857 0.38 -2.9 871,989 + Dshi_0857 0.42 -2.5 872,149 - Dshi_0857 0.46 -0.7 872,233 + Dshi_0857 0.49 +0.5 872,289 + Dshi_0857 0.51 -2.7 872,296 - Dshi_0857 0.51 -2.5 872,446 - Dshi_0857 0.55 -0.7 872,461 - Dshi_0857 0.56 -0.4 872,507 - Dshi_0857 0.57 +1.5 872,776 - Dshi_0857 0.65 -1.9 872,803 + Dshi_0857 0.66 -0.1 872,877 - Dshi_0857 0.68 -1.7 872,959 - Dshi_0857 0.71 -0.5 873,148 + Dshi_0857 0.76 -1.3 873,283 + Dshi_0857 0.80 +0.3 873,344 - Dshi_0857 0.82 +2.5 873,385 + Dshi_0857 0.83 -0.9 873,420 + Dshi_0857 0.84 +0.5 873,436 - Dshi_0857 0.85 -0.9 873,459 - Dshi_0857 0.86 -1.7 873,596 + Dshi_0857 0.90 -1.1 873,787 + +0.5 873,819 + -0.5 873,954 - +0.9 874,060 - -1.4 874,102 + +0.5 874,159 + -0.5 874,259 - -2.5 874,259 - -0.5 874,260 + +0.5 874,268 - Dshi_0858 0.10 -2.4 874,414 - Dshi_0858 0.31 +1.5
Or see this region's nucleotide sequence