Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0783

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0780 and Dshi_0781 are separated by 4 nucleotidesDshi_0781 and Dshi_0782 are separated by 73 nucleotidesDshi_0782 and Dshi_0783 are separated by 46 nucleotidesDshi_0783 and Dshi_0784 are separated by 131 nucleotidesDshi_0784 and Dshi_0785 are separated by 48 nucleotides Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637 _0780 Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929 _0781 Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569 _0782 Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579 _0783 Dshi_0784: Dshi_0784 - RNA-binding S4 (RefSeq), at 790,711 to 790,959 _0784 Dshi_0785: Dshi_0785 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 791,008 to 791,346 _0785 Position (kb) 787 788 789 790 791Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 786.621 kb on + strandat 787.008 kb on + strandat 787.018 kb on + strandat 787.026 kb on + strandat 787.081 kb on + strand, within Dshi_0782at 787.081 kb on + strand, within Dshi_0782at 787.081 kb on + strand, within Dshi_0782at 787.175 kb on - strand, within Dshi_0782at 787.256 kb on - strand, within Dshi_0782at 787.319 kb on - strand, within Dshi_0782at 787.319 kb on - strand, within Dshi_0782at 787.333 kb on + strand, within Dshi_0782at 787.366 kb on - strand, within Dshi_0782at 787.385 kb on + strand, within Dshi_0782at 787.405 kb on - strand, within Dshi_0782at 787.463 kb on - strand, within Dshi_0782at 787.563 kb on + strandat 787.576 kb on - strandat 787.604 kb on + strandat 787.606 kb on + strandat 787.664 kb on + strandat 787.672 kb on + strandat 787.733 kb on - strandat 787.801 kb on - strandat 787.801 kb on - strandat 787.850 kb on + strandat 787.903 kb on - strandat 787.934 kb on + strand, within Dshi_0783at 787.941 kb on - strand, within Dshi_0783at 787.951 kb on + strand, within Dshi_0783at 788.031 kb on - strand, within Dshi_0783at 788.076 kb on - strand, within Dshi_0783at 788.076 kb on - strand, within Dshi_0783at 788.078 kb on - strand, within Dshi_0783at 788.102 kb on + strand, within Dshi_0783at 788.230 kb on + strand, within Dshi_0783at 788.280 kb on + strand, within Dshi_0783at 788.298 kb on + strand, within Dshi_0783at 788.482 kb on - strand, within Dshi_0783at 788.529 kb on + strand, within Dshi_0783at 788.650 kb on + strand, within Dshi_0783at 788.786 kb on + strand, within Dshi_0783at 788.794 kb on - strand, within Dshi_0783at 788.866 kb on + strand, within Dshi_0783at 788.932 kb on + strand, within Dshi_0783at 788.958 kb on + strand, within Dshi_0783at 788.969 kb on - strand, within Dshi_0783at 788.971 kb on - strand, within Dshi_0783at 789.030 kb on - strand, within Dshi_0783at 789.121 kb on - strand, within Dshi_0783at 789.270 kb on + strand, within Dshi_0783at 789.284 kb on + strand, within Dshi_0783at 789.350 kb on - strand, within Dshi_0783at 789.378 kb on + strand, within Dshi_0783at 789.381 kb on - strand, within Dshi_0783at 789.445 kb on + strand, within Dshi_0783at 789.496 kb on - strand, within Dshi_0783at 789.603 kb on + strand, within Dshi_0783at 789.762 kb on - strand, within Dshi_0783at 789.847 kb on - strand, within Dshi_0783at 789.861 kb on + strand, within Dshi_0783at 789.938 kb on + strand, within Dshi_0783at 790.326 kb on - strandat 790.894 kb on + strand, within Dshi_0784

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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786,621 + -1.8
787,008 + +0.2
787,018 + +0.1
787,026 + -0.7
787,081 + Dshi_0782 0.14 -2.2
787,081 + Dshi_0782 0.14 -1.7
787,081 + Dshi_0782 0.14 +0.4
787,175 - Dshi_0782 0.30 -0.1
787,256 - Dshi_0782 0.45 +0.0
787,319 - Dshi_0782 0.56 +0.5
787,319 - Dshi_0782 0.56 -0.8
787,333 + Dshi_0782 0.58 +1.5
787,366 - Dshi_0782 0.64 +0.0
787,385 + Dshi_0782 0.67 -1.0
787,405 - Dshi_0782 0.71 -0.5
787,463 - Dshi_0782 0.81 +0.5
787,563 + -2.3
787,576 - +1.8
787,604 + -2.1
787,606 + +1.1
787,664 + +0.5
787,672 + +2.1
787,733 - -0.6
787,801 - -2.3
787,801 - -0.4
787,850 + +2.9
787,903 - +4.0
787,934 + Dshi_0783 0.11 +1.5
787,941 - Dshi_0783 0.11 -1.3
787,951 + Dshi_0783 0.11 -2.3
788,031 - Dshi_0783 0.14 -1.9
788,076 - Dshi_0783 0.16 -3.2
788,076 - Dshi_0783 0.16 +0.5
788,078 - Dshi_0783 0.16 +0.5
788,102 + Dshi_0783 0.16 +0.5
788,230 + Dshi_0783 0.21 -1.2
788,280 + Dshi_0783 0.22 +1.1
788,298 + Dshi_0783 0.23 -0.9
788,482 - Dshi_0783 0.29 -0.3
788,529 + Dshi_0783 0.31 +1.0
788,650 + Dshi_0783 0.35 +0.5
788,786 + Dshi_0783 0.39 -0.2
788,794 - Dshi_0783 0.40 -1.0
788,866 + Dshi_0783 0.42 +0.2
788,932 + Dshi_0783 0.44 +0.5
788,958 + Dshi_0783 0.45 +0.5
788,969 - Dshi_0783 0.46 +2.0
788,971 - Dshi_0783 0.46 -2.2
789,030 - Dshi_0783 0.48 +0.2
789,121 - Dshi_0783 0.51 -0.8
789,270 + Dshi_0783 0.56 -0.1
789,284 + Dshi_0783 0.56 +1.4
789,350 - Dshi_0783 0.59 +0.5
789,378 + Dshi_0783 0.59 +0.5
789,381 - Dshi_0783 0.60 -0.5
789,445 + Dshi_0783 0.62 -0.5
789,496 - Dshi_0783 0.63 +2.1
789,603 + Dshi_0783 0.67 -1.5
789,762 - Dshi_0783 0.72 +1.3
789,847 - Dshi_0783 0.75 -0.9
789,861 + Dshi_0783 0.76 -3.0
789,938 + Dshi_0783 0.78 -0.6
790,326 - -0.3
790,894 + Dshi_0784 0.73 -2.0

Or see this region's nucleotide sequence