Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0717

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0716 and Dshi_0717 are separated by 60 nucleotidesDshi_0717 and Dshi_0718 are separated by 349 nucleotides Dshi_0716: Dshi_0716 - transcriptional regulator, XRE family (RefSeq), at 723,225 to 724,619 _0716 Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906 _0717 Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 726,256 to 727,788 _0718 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 723.811 kb on + strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.892 kb on - strand, within Dshi_0716at 723.993 kb on + strand, within Dshi_0716at 724.041 kb on + strand, within Dshi_0716at 724.049 kb on - strand, within Dshi_0716at 724.073 kb on + strand, within Dshi_0716at 724.142 kb on - strand, within Dshi_0716at 724.163 kb on + strand, within Dshi_0716at 724.181 kb on + strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.191 kb on + strand, within Dshi_0716at 724.192 kb on + strand, within Dshi_0716at 724.199 kb on - strand, within Dshi_0716at 724.234 kb on - strand, within Dshi_0716at 724.265 kb on - strand, within Dshi_0716at 724.425 kb on - strand, within Dshi_0716at 724.479 kb on - strand, within Dshi_0716at 724.491 kb on + strandat 724.787 kb on + strandat 724.986 kb on + strandat 724.994 kb on - strand, within Dshi_0717at 725.004 kb on + strand, within Dshi_0717at 725.055 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.266 kb on + strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.341 kb on - strand, within Dshi_0717at 725.467 kb on + strand, within Dshi_0717at 725.507 kb on + strand, within Dshi_0717at 725.518 kb on - strand, within Dshi_0717at 725.597 kb on - strand, within Dshi_0717at 725.615 kb on + strand, within Dshi_0717at 725.745 kb on + strand, within Dshi_0717at 725.745 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.848 kb on - strandat 725.863 kb on + strandat 725.871 kb on + strandat 725.908 kb on + strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.979 kb on + strandat 726.005 kb on - strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.226 kb on - strandat 726.253 kb on - strandat 726.255 kb on + strandat 726.422 kb on - strand, within Dshi_0718at 726.459 kb on - strand, within Dshi_0718at 726.533 kb on + strand, within Dshi_0718at 726.538 kb on + strand, within Dshi_0718at 726.563 kb on + strand, within Dshi_0718at 726.691 kb on - strand, within Dshi_0718at 726.766 kb on + strand, within Dshi_0718at 726.777 kb on - strand, within Dshi_0718at 726.815 kb on + strand, within Dshi_0718at 726.825 kb on - strand, within Dshi_0718at 726.844 kb on - strand, within Dshi_0718at 726.878 kb on + strand, within Dshi_0718

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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723,811 + Dshi_0716 0.42 -0.6
723,885 - Dshi_0716 0.47 +0.9
723,885 - Dshi_0716 0.47 -1.6
723,885 - Dshi_0716 0.47 +2.1
723,892 - Dshi_0716 0.48 -0.5
723,993 + Dshi_0716 0.55 -1.8
724,041 + Dshi_0716 0.58 +0.7
724,049 - Dshi_0716 0.59 +0.1
724,073 + Dshi_0716 0.61 -0.5
724,142 - Dshi_0716 0.66 +1.1
724,163 + Dshi_0716 0.67 -0.9
724,181 + Dshi_0716 0.69 -0.8
724,189 - Dshi_0716 0.69 -0.3
724,189 - Dshi_0716 0.69 -1.0
724,189 - Dshi_0716 0.69 +0.3
724,191 + Dshi_0716 0.69 -1.0
724,192 + Dshi_0716 0.69 -0.8
724,199 - Dshi_0716 0.70 -1.7
724,234 - Dshi_0716 0.72 +0.5
724,265 - Dshi_0716 0.75 -2.6
724,425 - Dshi_0716 0.86 -1.6
724,479 - Dshi_0716 0.90 -1.4
724,491 + +2.1
724,787 + -0.3
724,986 + -1.5
724,994 - Dshi_0717 0.26 -1.1
725,004 + Dshi_0717 0.26 -1.3
725,055 - Dshi_0717 0.31 -1.5
725,182 - Dshi_0717 0.41 +0.5
725,182 - Dshi_0717 0.41 +4.0
725,182 - Dshi_0717 0.41 -0.2
725,266 + Dshi_0717 0.48 +0.1
725,274 - Dshi_0717 0.48 +2.5
725,274 - Dshi_0717 0.48 +1.5
725,274 - Dshi_0717 0.48 -0.9
725,329 + Dshi_0717 0.53 -2.0
725,329 + Dshi_0717 0.53 +0.8
725,341 - Dshi_0717 0.54 +0.5
725,467 + Dshi_0717 0.64 -0.6
725,507 + Dshi_0717 0.67 -1.0
725,518 - Dshi_0717 0.68 -1.3
725,597 - Dshi_0717 0.75 -0.7
725,615 + Dshi_0717 0.76 +0.7
725,745 + Dshi_0717 0.87 -1.5
725,745 - Dshi_0717 0.87 -0.2
725,753 - Dshi_0717 0.87 -0.5
725,753 - Dshi_0717 0.87 -0.7
725,848 - -0.4
725,863 + -2.4
725,871 + +0.5
725,908 + -0.5
725,916 - +1.8
725,916 - +1.0
725,916 - -0.2
725,916 - -1.1
725,979 + +2.2
726,005 - +3.4
726,063 + -0.5
726,063 + -0.1
726,063 + +0.5
726,071 - +0.2
726,071 - +2.2
726,071 - -0.5
726,226 - +1.1
726,253 - -0.5
726,255 + +0.5
726,422 - Dshi_0718 0.11 -1.1
726,459 - Dshi_0718 0.13 -0.5
726,533 + Dshi_0718 0.18 -0.2
726,538 + Dshi_0718 0.18 -0.7
726,563 + Dshi_0718 0.20 -2.3
726,691 - Dshi_0718 0.28 +3.3
726,766 + Dshi_0718 0.33 -2.7
726,777 - Dshi_0718 0.34 +1.7
726,815 + Dshi_0718 0.36 -1.0
726,825 - Dshi_0718 0.37 -0.8
726,844 - Dshi_0718 0.38 +0.5
726,878 + Dshi_0718 0.41 -1.1

Or see this region's nucleotide sequence