Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0716 and Dshi_0717 are separated by 60 nucleotides Dshi_0717 and Dshi_0718 are separated by 349 nucleotides
Dshi_0716: Dshi_0716 - transcriptional regulator, XRE family (RefSeq), at 723,225 to 724,619
_0716
Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906
_0717
Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data) , at 726,256 to 727,788
_0718
Position (kb)
724
725
726 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 723.811 kb on + strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.892 kb on - strand, within Dshi_0716 at 723.993 kb on + strand, within Dshi_0716 at 724.041 kb on + strand, within Dshi_0716 at 724.049 kb on - strand, within Dshi_0716 at 724.073 kb on + strand, within Dshi_0716 at 724.142 kb on - strand, within Dshi_0716 at 724.163 kb on + strand, within Dshi_0716 at 724.181 kb on + strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.191 kb on + strand, within Dshi_0716 at 724.192 kb on + strand, within Dshi_0716 at 724.199 kb on - strand, within Dshi_0716 at 724.234 kb on - strand, within Dshi_0716 at 724.265 kb on - strand, within Dshi_0716 at 724.425 kb on - strand, within Dshi_0716 at 724.479 kb on - strand, within Dshi_0716 at 724.491 kb on + strand at 724.787 kb on + strand at 724.986 kb on + strand at 724.994 kb on - strand, within Dshi_0717 at 725.004 kb on + strand, within Dshi_0717 at 725.055 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.266 kb on + strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.341 kb on - strand, within Dshi_0717 at 725.467 kb on + strand, within Dshi_0717 at 725.507 kb on + strand, within Dshi_0717 at 725.518 kb on - strand, within Dshi_0717 at 725.597 kb on - strand, within Dshi_0717 at 725.615 kb on + strand, within Dshi_0717 at 725.745 kb on + strand, within Dshi_0717 at 725.745 kb on - strand, within Dshi_0717 at 725.753 kb on - strand, within Dshi_0717 at 725.753 kb on - strand, within Dshi_0717 at 725.848 kb on - strand at 725.863 kb on + strand at 725.871 kb on + strand at 725.908 kb on + strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.916 kb on - strand at 725.979 kb on + strand at 726.005 kb on - strand at 726.063 kb on + strand at 726.063 kb on + strand at 726.063 kb on + strand at 726.071 kb on - strand at 726.071 kb on - strand at 726.071 kb on - strand at 726.226 kb on - strand at 726.253 kb on - strand at 726.255 kb on + strand at 726.422 kb on - strand, within Dshi_0718 at 726.459 kb on - strand, within Dshi_0718 at 726.533 kb on + strand, within Dshi_0718 at 726.538 kb on + strand, within Dshi_0718 at 726.563 kb on + strand, within Dshi_0718 at 726.691 kb on - strand, within Dshi_0718 at 726.766 kb on + strand, within Dshi_0718 at 726.777 kb on - strand, within Dshi_0718 at 726.815 kb on + strand, within Dshi_0718 at 726.825 kb on - strand, within Dshi_0718 at 726.844 kb on - strand, within Dshi_0718 at 726.878 kb on + strand, within Dshi_0718
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 723,811 + Dshi_0716 0.42 -0.6 723,885 - Dshi_0716 0.47 +0.9 723,885 - Dshi_0716 0.47 -1.6 723,885 - Dshi_0716 0.47 +2.1 723,892 - Dshi_0716 0.48 -0.5 723,993 + Dshi_0716 0.55 -1.8 724,041 + Dshi_0716 0.58 +0.7 724,049 - Dshi_0716 0.59 +0.1 724,073 + Dshi_0716 0.61 -0.5 724,142 - Dshi_0716 0.66 +1.1 724,163 + Dshi_0716 0.67 -0.9 724,181 + Dshi_0716 0.69 -0.8 724,189 - Dshi_0716 0.69 -0.3 724,189 - Dshi_0716 0.69 -1.0 724,189 - Dshi_0716 0.69 +0.3 724,191 + Dshi_0716 0.69 -1.0 724,192 + Dshi_0716 0.69 -0.8 724,199 - Dshi_0716 0.70 -1.7 724,234 - Dshi_0716 0.72 +0.5 724,265 - Dshi_0716 0.75 -2.6 724,425 - Dshi_0716 0.86 -1.6 724,479 - Dshi_0716 0.90 -1.4 724,491 + +2.1 724,787 + -0.3 724,986 + -1.5 724,994 - Dshi_0717 0.26 -1.1 725,004 + Dshi_0717 0.26 -1.3 725,055 - Dshi_0717 0.31 -1.5 725,182 - Dshi_0717 0.41 +0.5 725,182 - Dshi_0717 0.41 +4.0 725,182 - Dshi_0717 0.41 -0.2 725,266 + Dshi_0717 0.48 +0.1 725,274 - Dshi_0717 0.48 +2.5 725,274 - Dshi_0717 0.48 +1.5 725,274 - Dshi_0717 0.48 -0.9 725,329 + Dshi_0717 0.53 -2.0 725,329 + Dshi_0717 0.53 +0.8 725,341 - Dshi_0717 0.54 +0.5 725,467 + Dshi_0717 0.64 -0.6 725,507 + Dshi_0717 0.67 -1.0 725,518 - Dshi_0717 0.68 -1.3 725,597 - Dshi_0717 0.75 -0.7 725,615 + Dshi_0717 0.76 +0.7 725,745 + Dshi_0717 0.87 -1.5 725,745 - Dshi_0717 0.87 -0.2 725,753 - Dshi_0717 0.87 -0.5 725,753 - Dshi_0717 0.87 -0.7 725,848 - -0.4 725,863 + -2.4 725,871 + +0.5 725,908 + -0.5 725,916 - +1.8 725,916 - +1.0 725,916 - -0.2 725,916 - -1.1 725,979 + +2.2 726,005 - +3.4 726,063 + -0.5 726,063 + -0.1 726,063 + +0.5 726,071 - +0.2 726,071 - +2.2 726,071 - -0.5 726,226 - +1.1 726,253 - -0.5 726,255 + +0.5 726,422 - Dshi_0718 0.11 -1.1 726,459 - Dshi_0718 0.13 -0.5 726,533 + Dshi_0718 0.18 -0.2 726,538 + Dshi_0718 0.18 -0.7 726,563 + Dshi_0718 0.20 -2.3 726,691 - Dshi_0718 0.28 +3.3 726,766 + Dshi_0718 0.33 -2.7 726,777 - Dshi_0718 0.34 +1.7 726,815 + Dshi_0718 0.36 -1.0 726,825 - Dshi_0718 0.37 -0.8 726,844 - Dshi_0718 0.38 +0.5 726,878 + Dshi_0718 0.41 -1.1
Or see this region's nucleotide sequence