Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0714 and Dshi_0715 are separated by 84 nucleotides Dshi_0715 and Dshi_0716 are separated by 13 nucleotides Dshi_0716 and Dshi_0717 are separated by 60 nucleotides
Dshi_0714: Dshi_0714 - protein of unknown function DUF6 transmembrane (RefSeq), at 721,916 to 722,884
_0714
Dshi_0715: Dshi_0715 - protein of unknown function DUF465 (RefSeq), at 722,969 to 723,211
_0715
Dshi_0716: Dshi_0716 - transcriptional regulator, XRE family (RefSeq), at 723,225 to 724,619
_0716
Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906
_0717
Position (kb) 723
724
725 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 722.282 kb on + strand, within Dshi_0714 at 722.604 kb on + strand, within Dshi_0714 at 722.612 kb on + strand, within Dshi_0714 at 722.617 kb on + strand, within Dshi_0714 at 722.777 kb on + strand, within Dshi_0714 at 722.908 kb on + strand at 722.908 kb on + strand at 722.931 kb on + strand at 722.939 kb on - strand at 722.939 kb on - strand at 722.981 kb on + strand at 723.012 kb on + strand, within Dshi_0715 at 723.020 kb on - strand, within Dshi_0715 at 723.020 kb on - strand, within Dshi_0715 at 723.034 kb on + strand, within Dshi_0715 at 723.092 kb on + strand, within Dshi_0715 at 723.133 kb on - strand, within Dshi_0715 at 723.206 kb on + strand at 723.222 kb on + strand at 723.259 kb on - strand at 723.271 kb on - strand at 723.396 kb on - strand, within Dshi_0716 at 723.423 kb on + strand, within Dshi_0716 at 723.424 kb on - strand, within Dshi_0716 at 723.584 kb on + strand, within Dshi_0716 at 723.647 kb on - strand, within Dshi_0716 at 723.811 kb on + strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.892 kb on - strand, within Dshi_0716 at 723.993 kb on + strand, within Dshi_0716 at 724.041 kb on + strand, within Dshi_0716 at 724.049 kb on - strand, within Dshi_0716 at 724.073 kb on + strand, within Dshi_0716 at 724.142 kb on - strand, within Dshi_0716 at 724.163 kb on + strand, within Dshi_0716 at 724.181 kb on + strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.191 kb on + strand, within Dshi_0716 at 724.192 kb on + strand, within Dshi_0716 at 724.199 kb on - strand, within Dshi_0716 at 724.234 kb on - strand, within Dshi_0716 at 724.265 kb on - strand, within Dshi_0716 at 724.425 kb on - strand, within Dshi_0716 at 724.479 kb on - strand, within Dshi_0716 at 724.491 kb on + strand at 724.787 kb on + strand at 724.986 kb on + strand at 724.994 kb on - strand, within Dshi_0717 at 725.004 kb on + strand, within Dshi_0717 at 725.055 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.266 kb on + strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.341 kb on - strand, within Dshi_0717 at 725.467 kb on + strand, within Dshi_0717 at 725.507 kb on + strand, within Dshi_0717 at 725.518 kb on - strand, within Dshi_0717 at 725.597 kb on - strand, within Dshi_0717 at 725.615 kb on + strand, within Dshi_0717
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 722,282 + Dshi_0714 0.38 -2.2 722,604 + Dshi_0714 0.71 +0.2 722,612 + Dshi_0714 0.72 +0.2 722,617 + Dshi_0714 0.72 -1.2 722,777 + Dshi_0714 0.89 +0.1 722,908 + -0.8 722,908 + -1.4 722,931 + +2.1 722,939 - -0.7 722,939 - -1.6 722,981 + +0.0 723,012 + Dshi_0715 0.18 -2.3 723,020 - Dshi_0715 0.21 +2.1 723,020 - Dshi_0715 0.21 -1.1 723,034 + Dshi_0715 0.27 -0.5 723,092 + Dshi_0715 0.51 -0.4 723,133 - Dshi_0715 0.67 -0.5 723,206 + +0.1 723,222 + -0.3 723,259 - +0.2 723,271 - +3.7 723,396 - Dshi_0716 0.12 -0.5 723,423 + Dshi_0716 0.14 +0.2 723,424 - Dshi_0716 0.14 -1.8 723,584 + Dshi_0716 0.26 -1.4 723,647 - Dshi_0716 0.30 +0.5 723,811 + Dshi_0716 0.42 -0.6 723,885 - Dshi_0716 0.47 +0.9 723,885 - Dshi_0716 0.47 -1.6 723,885 - Dshi_0716 0.47 +2.1 723,892 - Dshi_0716 0.48 -0.5 723,993 + Dshi_0716 0.55 -1.8 724,041 + Dshi_0716 0.58 +0.7 724,049 - Dshi_0716 0.59 +0.1 724,073 + Dshi_0716 0.61 -0.5 724,142 - Dshi_0716 0.66 +1.1 724,163 + Dshi_0716 0.67 -0.9 724,181 + Dshi_0716 0.69 -0.8 724,189 - Dshi_0716 0.69 -0.3 724,189 - Dshi_0716 0.69 -1.0 724,189 - Dshi_0716 0.69 +0.3 724,191 + Dshi_0716 0.69 -1.0 724,192 + Dshi_0716 0.69 -0.8 724,199 - Dshi_0716 0.70 -1.7 724,234 - Dshi_0716 0.72 +0.5 724,265 - Dshi_0716 0.75 -2.6 724,425 - Dshi_0716 0.86 -1.6 724,479 - Dshi_0716 0.90 -1.4 724,491 + +2.1 724,787 + -0.3 724,986 + -1.5 724,994 - Dshi_0717 0.26 -1.1 725,004 + Dshi_0717 0.26 -1.3 725,055 - Dshi_0717 0.31 -1.5 725,182 - Dshi_0717 0.41 +0.5 725,182 - Dshi_0717 0.41 +4.0 725,182 - Dshi_0717 0.41 -0.2 725,266 + Dshi_0717 0.48 +0.1 725,274 - Dshi_0717 0.48 +2.5 725,274 - Dshi_0717 0.48 +1.5 725,274 - Dshi_0717 0.48 -0.9 725,329 + Dshi_0717 0.53 -2.0 725,329 + Dshi_0717 0.53 +0.8 725,341 - Dshi_0717 0.54 +0.5 725,467 + Dshi_0717 0.64 -0.6 725,507 + Dshi_0717 0.67 -1.0 725,518 - Dshi_0717 0.68 -1.3 725,597 - Dshi_0717 0.75 -0.7 725,615 + Dshi_0717 0.76 +0.7
Or see this region's nucleotide sequence