Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0682 and Dshi_0683 are separated by 176 nucleotides Dshi_0683 and Dshi_0684 overlap by 4 nucleotides Dshi_0684 and Dshi_0685 are separated by 7 nucleotides Dshi_0685 and Dshi_0686 overlap by 4 nucleotides
Dshi_0682: Dshi_0682 - protein of unknown function DUF465 (RefSeq), at 688,389 to 688,613
_0682
Dshi_0683: Dshi_0683 - heat shock protein Hsp20 (RefSeq), at 688,790 to 689,233
_0683
Dshi_0684: Dshi_0684 - protein of unknown function DUF1150 (RefSeq), at 689,230 to 689,457
_0684
Dshi_0685: Dshi_0685 - ApbE family lipoprotein (RefSeq), at 689,465 to 690,361
_0685
Dshi_0686: Dshi_0686 - regulatory protein, putative (RefSeq), at 690,358 to 692,448
_0686
Position (kb) 689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 688.492 kb on - strand, within Dshi_0682 at 688.657 kb on + strand at 688.681 kb on - strand at 688.684 kb on + strand at 688.692 kb on - strand at 688.838 kb on - strand, within Dshi_0683 at 688.878 kb on - strand, within Dshi_0683 at 689.035 kb on + strand, within Dshi_0683 at 689.087 kb on - strand, within Dshi_0683 at 689.087 kb on - strand, within Dshi_0683 at 689.129 kb on + strand, within Dshi_0683 at 689.130 kb on - strand, within Dshi_0683 at 689.191 kb on - strand at 689.255 kb on + strand, within Dshi_0684 at 689.275 kb on + strand, within Dshi_0684 at 689.301 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.336 kb on - strand, within Dshi_0684 at 689.508 kb on - strand at 689.518 kb on - strand at 689.628 kb on - strand, within Dshi_0685 at 689.695 kb on + strand, within Dshi_0685 at 689.780 kb on - strand, within Dshi_0685 at 689.840 kb on - strand, within Dshi_0685 at 689.892 kb on - strand, within Dshi_0685 at 689.902 kb on + strand, within Dshi_0685 at 689.949 kb on - strand, within Dshi_0685 at 689.951 kb on + strand, within Dshi_0685 at 690.041 kb on - strand, within Dshi_0685 at 690.133 kb on - strand, within Dshi_0685 at 690.186 kb on - strand, within Dshi_0685 at 690.212 kb on - strand, within Dshi_0685 at 690.368 kb on + strand at 690.414 kb on - strand at 690.433 kb on + strand at 690.515 kb on + strand at 690.598 kb on + strand, within Dshi_0686 at 690.608 kb on + strand, within Dshi_0686 at 690.643 kb on + strand, within Dshi_0686 at 690.646 kb on - strand, within Dshi_0686 at 690.686 kb on + strand, within Dshi_0686 at 690.694 kb on - strand, within Dshi_0686 at 690.733 kb on - strand, within Dshi_0686 at 690.780 kb on - strand, within Dshi_0686 at 690.826 kb on - strand, within Dshi_0686 at 690.915 kb on + strand, within Dshi_0686 at 690.980 kb on - strand, within Dshi_0686 at 691.003 kb on - strand, within Dshi_0686 at 691.035 kb on - strand, within Dshi_0686 at 691.083 kb on - strand, within Dshi_0686 at 691.088 kb on - strand, within Dshi_0686 at 691.141 kb on - strand, within Dshi_0686 at 691.234 kb on - strand, within Dshi_0686 at 691.253 kb on - strand, within Dshi_0686 at 691.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 688,492 - Dshi_0682 0.46 +1.7 688,657 + -0.6 688,681 - +2.5 688,684 + -1.0 688,692 - +0.5 688,838 - Dshi_0683 0.11 -1.2 688,878 - Dshi_0683 0.20 -0.5 689,035 + Dshi_0683 0.55 +3.6 689,087 - Dshi_0683 0.67 +2.1 689,087 - Dshi_0683 0.67 -0.9 689,129 + Dshi_0683 0.76 +0.5 689,130 - Dshi_0683 0.77 -3.2 689,191 - -1.3 689,255 + Dshi_0684 0.11 -0.0 689,275 + Dshi_0684 0.20 +1.5 689,301 - Dshi_0684 0.31 +0.7 689,336 - Dshi_0684 0.46 -1.3 689,336 - Dshi_0684 0.46 +0.5 689,336 - Dshi_0684 0.46 -1.1 689,508 - +0.9 689,518 - +0.9 689,628 - Dshi_0685 0.18 -1.1 689,695 + Dshi_0685 0.26 +0.5 689,780 - Dshi_0685 0.35 -0.5 689,840 - Dshi_0685 0.42 -0.5 689,892 - Dshi_0685 0.48 -0.8 689,902 + Dshi_0685 0.49 -0.5 689,949 - Dshi_0685 0.54 -0.3 689,951 + Dshi_0685 0.54 -2.1 690,041 - Dshi_0685 0.64 +0.2 690,133 - Dshi_0685 0.74 -0.5 690,186 - Dshi_0685 0.80 -0.4 690,212 - Dshi_0685 0.83 -0.2 690,368 + +0.5 690,414 - +0.5 690,433 + +0.5 690,515 + -0.9 690,598 + Dshi_0686 0.11 +0.2 690,608 + Dshi_0686 0.12 -2.0 690,643 + Dshi_0686 0.14 -1.1 690,646 - Dshi_0686 0.14 -1.3 690,686 + Dshi_0686 0.16 +0.3 690,694 - Dshi_0686 0.16 -0.1 690,733 - Dshi_0686 0.18 +0.5 690,780 - Dshi_0686 0.20 -2.7 690,826 - Dshi_0686 0.22 -1.7 690,915 + Dshi_0686 0.27 -2.2 690,980 - Dshi_0686 0.30 -1.8 691,003 - Dshi_0686 0.31 -3.2 691,035 - Dshi_0686 0.32 -1.9 691,083 - Dshi_0686 0.35 +0.5 691,088 - Dshi_0686 0.35 -2.1 691,141 - Dshi_0686 0.37 -0.1 691,234 - Dshi_0686 0.42 +3.5 691,253 - Dshi_0686 0.43 +0.6 691,307 - +1.5
Or see this region's nucleotide sequence