Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0650 and Dshi_0651 are separated by 330 nucleotides Dshi_0651 and Dshi_0652 are separated by 20 nucleotides Dshi_0652 and Dshi_0653 are separated by 45 nucleotides
Dshi_0650: Dshi_0650 - DNA polymerase III, subunits gamma and tau (RefSeq), at 651,643 to 653,406
_0650
Dshi_0651: Dshi_0651 - NUDIX hydrolase (RefSeq), at 653,737 to 654,693
_0651
Dshi_0652: Dshi_0652 - hypothetical protein (RefSeq), at 654,714 to 655,202
_0652
Dshi_0653: Dshi_0653 - Prephenate dehydratase (RefSeq), at 655,248 to 656,090
_0653
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 653.510 kb on + strand at 653.653 kb on + strand at 653.661 kb on - strand at 653.700 kb on + strand at 653.726 kb on + strand at 653.733 kb on + strand at 653.741 kb on + strand at 653.741 kb on - strand at 653.966 kb on + strand, within Dshi_0651 at 653.984 kb on + strand, within Dshi_0651 at 654.047 kb on + strand, within Dshi_0651 at 654.114 kb on - strand, within Dshi_0651 at 654.125 kb on + strand, within Dshi_0651 at 654.159 kb on + strand, within Dshi_0651 at 654.166 kb on + strand, within Dshi_0651 at 654.407 kb on - strand, within Dshi_0651 at 654.409 kb on + strand, within Dshi_0651 at 654.528 kb on - strand, within Dshi_0651 at 654.539 kb on + strand, within Dshi_0651 at 654.776 kb on - strand, within Dshi_0652 at 654.840 kb on + strand, within Dshi_0652 at 654.944 kb on + strand, within Dshi_0652 at 655.036 kb on + strand, within Dshi_0652 at 655.044 kb on - strand, within Dshi_0652 at 655.063 kb on + strand, within Dshi_0652 at 655.158 kb on - strand at 655.651 kb on - strand, within Dshi_0653
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 653,510 + -1.0 653,653 + +0.0 653,661 - +0.6 653,700 + +0.4 653,726 + +1.4 653,733 + +0.0 653,741 + +0.1 653,741 - -3.0 653,966 + Dshi_0651 0.24 -2.6 653,984 + Dshi_0651 0.26 +0.1 654,047 + Dshi_0651 0.32 -1.1 654,114 - Dshi_0651 0.39 -0.6 654,125 + Dshi_0651 0.41 +0.5 654,159 + Dshi_0651 0.44 -0.4 654,166 + Dshi_0651 0.45 -3.0 654,407 - Dshi_0651 0.70 -1.1 654,409 + Dshi_0651 0.70 -1.1 654,528 - Dshi_0651 0.83 -2.9 654,539 + Dshi_0651 0.84 -0.6 654,776 - Dshi_0652 0.13 -0.0 654,840 + Dshi_0652 0.26 +0.1 654,944 + Dshi_0652 0.47 -1.3 655,036 + Dshi_0652 0.66 +0.3 655,044 - Dshi_0652 0.67 +1.0 655,063 + Dshi_0652 0.71 -0.4 655,158 - -0.9 655,651 - Dshi_0653 0.48 +1.0
Or see this region's nucleotide sequence