Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0617

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0615 and Dshi_0616 are separated by 111 nucleotidesDshi_0616 and Dshi_0617 are separated by 372 nucleotidesDshi_0617 and Dshi_0618 are separated by 44 nucleotidesDshi_0618 and Dshi_0619 are separated by 228 nucleotides Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172 _0615 Dshi_0616: Dshi_0616 - hypothetical protein (RefSeq), at 608,284 to 608,697 _0616 Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685 _0617 Dshi_0618: Dshi_0618 - hypothetical protein (RefSeq), at 611,730 to 612,320 _0618 Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863 _0619 Position (kb) 609 610 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 608.106 kb on + strandat 608.106 kb on + strandat 608.114 kb on - strandat 608.199 kb on - strandat 608.199 kb on - strandat 608.222 kb on - strandat 608.234 kb on + strandat 608.234 kb on + strandat 608.247 kb on + strandat 608.353 kb on + strand, within Dshi_0616at 608.370 kb on - strand, within Dshi_0616at 608.370 kb on - strand, within Dshi_0616at 608.407 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.451 kb on + strand, within Dshi_0616at 608.480 kb on - strand, within Dshi_0616at 608.489 kb on + strand, within Dshi_0616at 608.589 kb on + strand, within Dshi_0616at 608.589 kb on + strand, within Dshi_0616at 608.604 kb on + strand, within Dshi_0616at 608.617 kb on - strand, within Dshi_0616at 608.636 kb on - strand, within Dshi_0616at 608.761 kb on + strandat 608.823 kb on - strandat 608.880 kb on - strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.942 kb on + strandat 608.974 kb on + strandat 608.975 kb on + strandat 609.006 kb on - strandat 609.084 kb on + strandat 609.108 kb on + strandat 609.108 kb on + strandat 609.108 kb on + strandat 609.262 kb on + strandat 609.515 kb on - strand, within Dshi_0617at 609.573 kb on + strand, within Dshi_0617at 609.581 kb on - strand, within Dshi_0617at 609.609 kb on + strand, within Dshi_0617at 609.628 kb on - strand, within Dshi_0617at 609.666 kb on + strand, within Dshi_0617at 609.674 kb on - strand, within Dshi_0617at 609.684 kb on - strand, within Dshi_0617at 609.694 kb on + strand, within Dshi_0617at 609.730 kb on - strand, within Dshi_0617at 609.730 kb on - strand, within Dshi_0617at 609.751 kb on + strand, within Dshi_0617at 609.751 kb on + strand, within Dshi_0617at 609.797 kb on - strand, within Dshi_0617at 609.856 kb on - strand, within Dshi_0617at 609.928 kb on + strand, within Dshi_0617at 609.949 kb on - strand, within Dshi_0617at 609.951 kb on + strand, within Dshi_0617at 609.953 kb on + strandat 609.996 kb on - strandat 610.006 kb on - strand, within Dshi_0617at 610.006 kb on - strand, within Dshi_0617at 610.279 kb on + strand, within Dshi_0617at 610.279 kb on + strand, within Dshi_0617at 610.292 kb on + strand, within Dshi_0617at 610.300 kb on - strand, within Dshi_0617at 610.343 kb on + strand, within Dshi_0617at 610.379 kb on + strand, within Dshi_0617at 610.448 kb on + strand, within Dshi_0617at 610.501 kb on + strand, within Dshi_0617at 610.512 kb on + strand, within Dshi_0617at 610.572 kb on + strand, within Dshi_0617at 610.575 kb on - strand, within Dshi_0617at 610.580 kb on - strand, within Dshi_0617at 610.758 kb on - strand, within Dshi_0617at 610.841 kb on - strand, within Dshi_0617at 610.905 kb on + strand, within Dshi_0617at 610.905 kb on + strand, within Dshi_0617at 611.011 kb on + strand, within Dshi_0617at 611.019 kb on - strand, within Dshi_0617at 611.020 kb on - strand, within Dshi_0617at 611.049 kb on + strand, within Dshi_0617at 611.155 kb on + strand, within Dshi_0617at 611.180 kb on + strand, within Dshi_0617at 611.221 kb on - strand, within Dshi_0617at 611.262 kb on + strand, within Dshi_0617at 611.430 kb on - strandat 611.432 kb on + strandat 611.436 kb on + strandat 611.490 kb on - strandat 611.542 kb on + strandat 611.707 kb on + strandat 611.775 kb on + strandat 611.863 kb on + strand, within Dshi_0618at 611.974 kb on - strand, within Dshi_0618at 612.296 kb on - strandat 612.376 kb on + strandat 612.383 kb on + strandat 612.391 kb on - strandat 612.391 kb on - strandat 612.442 kb on + strandat 612.526 kb on + strandat 612.527 kb on + strandat 612.600 kb on - strand, within Dshi_0619at 612.651 kb on - strand, within Dshi_0619at 612.673 kb on + strand, within Dshi_0619

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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608,106 + -0.2
608,106 + -1.1
608,114 - -2.0
608,199 - -0.4
608,199 - +0.4
608,222 - -1.5
608,234 + -0.4
608,234 + -0.7
608,247 + -2.2
608,353 + Dshi_0616 0.17 -1.2
608,370 - Dshi_0616 0.21 -0.4
608,370 - Dshi_0616 0.21 +0.4
608,407 + Dshi_0616 0.30 +1.2
608,443 + Dshi_0616 0.38 +2.4
608,443 + Dshi_0616 0.38 -0.6
608,443 + Dshi_0616 0.38 -0.1
608,443 + Dshi_0616 0.38 +0.4
608,443 + Dshi_0616 0.38 -1.3
608,451 + Dshi_0616 0.40 -0.6
608,480 - Dshi_0616 0.47 +0.4
608,489 + Dshi_0616 0.50 -0.8
608,589 + Dshi_0616 0.74 +1.1
608,589 + Dshi_0616 0.74 -2.9
608,604 + Dshi_0616 0.77 -0.3
608,617 - Dshi_0616 0.80 -2.6
608,636 - Dshi_0616 0.85 +1.2
608,761 + -0.2
608,823 - -1.1
608,880 - +0.4
608,909 + -0.7
608,909 + -1.0
608,909 + -3.4
608,909 + +0.7
608,909 + +0.4
608,909 + -1.6
608,917 - -0.2
608,917 - -1.8
608,917 - +0.4
608,917 - -0.2
608,917 - +1.0
608,917 - -1.0
608,942 + +0.2
608,974 + +4.5
608,975 + -0.1
609,006 - -0.5
609,084 + +1.4
609,108 + +2.2
609,108 + +0.4
609,108 + +3.8
609,262 + +1.9
609,515 - Dshi_0617 0.17 -0.2
609,573 + Dshi_0617 0.19 -0.9
609,581 - Dshi_0617 0.20 +0.2
609,609 + Dshi_0617 0.21 +0.5
609,628 - Dshi_0617 0.21 -2.7
609,666 + Dshi_0617 0.23 +1.2
609,674 - Dshi_0617 0.23 -1.0
609,684 - Dshi_0617 0.23 -1.4
609,694 + Dshi_0617 0.24 +0.4
609,730 - Dshi_0617 0.25 -3.2
609,730 - Dshi_0617 0.25 -1.4
609,751 + Dshi_0617 0.26 -2.1
609,751 + Dshi_0617 0.26 +1.4
609,797 - Dshi_0617 0.28 -1.2
609,856 - Dshi_0617 0.30 -0.4
609,928 + Dshi_0617 0.33 +0.5
609,949 - Dshi_0617 0.34 +0.7
609,951 + Dshi_0617 0.34 +0.9
609,953 + +1.9
609,996 - +2.4
610,006 - Dshi_0617 0.36 -0.6
610,006 - Dshi_0617 0.36 +0.6
610,279 + Dshi_0617 0.46 -0.2
610,279 + Dshi_0617 0.46 +1.0
610,292 + Dshi_0617 0.47 +0.9
610,300 - Dshi_0617 0.47 -0.6
610,343 + Dshi_0617 0.49 +0.1
610,379 + Dshi_0617 0.50 -0.3
610,448 + Dshi_0617 0.53 -0.1
610,501 + Dshi_0617 0.55 +0.3
610,512 + Dshi_0617 0.55 -0.6
610,572 + Dshi_0617 0.57 -1.2
610,575 - Dshi_0617 0.58 -0.0
610,580 - Dshi_0617 0.58 -1.2
610,758 - Dshi_0617 0.65 +0.0
610,841 - Dshi_0617 0.68 -0.1
610,905 + Dshi_0617 0.70 +0.2
610,905 + Dshi_0617 0.70 -2.0
611,011 + Dshi_0617 0.74 -0.0
611,019 - Dshi_0617 0.75 +1.4
611,020 - Dshi_0617 0.75 -1.0
611,049 + Dshi_0617 0.76 -0.8
611,155 + Dshi_0617 0.80 -0.2
611,180 + Dshi_0617 0.81 -2.0
611,221 - Dshi_0617 0.82 -0.2
611,262 + Dshi_0617 0.84 +1.8
611,430 - -0.1
611,432 + -3.1
611,436 + -0.8
611,490 - -0.3
611,542 + +1.0
611,707 + -0.8
611,775 + +0.1
611,863 + Dshi_0618 0.23 -1.6
611,974 - Dshi_0618 0.41 +0.9
612,296 - -1.0
612,376 + -0.7
612,383 + -0.2
612,391 - +0.2
612,391 - +0.0
612,442 + -0.5
612,526 + -2.8
612,527 + +0.7
612,600 - Dshi_0619 0.16 -0.0
612,651 - Dshi_0619 0.32 +1.4
612,673 + Dshi_0619 0.39 +0.6

Or see this region's nucleotide sequence