Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0382 and Dshi_0383 are separated by 124 nucleotides Dshi_0383 and Dshi_0384 are separated by 121 nucleotides Dshi_0384 and Dshi_0385 are separated by 57 nucleotides
Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732
_0382
Dshi_0383: Dshi_0383 - hypothetical protein (RefSeq), at 365,857 to 366,321
_0383
Dshi_0384: Dshi_0384 - hypothetical protein (RefSeq), at 366,443 to 366,901
_0384
Dshi_0385: Dshi_0385 - DNA-directed DNA polymerase (RefSeq), at 366,959 to 368,212
_0385
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 365.050 kb on + strand, within Dshi_0382 at 365.058 kb on - strand, within Dshi_0382 at 365.080 kb on + strand, within Dshi_0382 at 365.117 kb on + strand, within Dshi_0382 at 365.184 kb on - strand, within Dshi_0382 at 365.517 kb on + strand, within Dshi_0382 at 365.529 kb on - strand, within Dshi_0382 at 365.656 kb on - strand at 365.666 kb on + strand at 365.778 kb on - strand at 365.865 kb on + strand at 365.928 kb on - strand, within Dshi_0383 at 366.028 kb on - strand, within Dshi_0383 at 366.337 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.377 kb on - strand at 366.784 kb on - strand, within Dshi_0384 at 366.937 kb on + strand at 367.049 kb on + strand at 367.071 kb on - strand at 367.073 kb on - strand at 367.127 kb on - strand, within Dshi_0385 at 367.283 kb on + strand, within Dshi_0385 at 367.295 kb on - strand, within Dshi_0385
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 365,050 + Dshi_0382 0.44 +2.0 365,058 - Dshi_0382 0.45 +1.4 365,080 + Dshi_0382 0.47 -1.3 365,117 + Dshi_0382 0.50 -2.0 365,184 - Dshi_0382 0.55 -1.1 365,517 + Dshi_0382 0.82 +1.2 365,529 - Dshi_0382 0.83 +2.4 365,656 - -0.3 365,666 + +2.4 365,778 - -3.1 365,865 + +2.4 365,928 - Dshi_0383 0.15 -1.7 366,028 - Dshi_0383 0.37 -1.9 366,337 + -2.4 366,369 + -1.1 366,369 + -1.6 366,369 + -1.9 366,377 - -0.6 366,784 - Dshi_0384 0.74 -2.0 366,937 + -0.3 367,049 + +2.0 367,071 - -1.6 367,073 - -2.1 367,127 - Dshi_0385 0.13 -3.3 367,283 + Dshi_0385 0.26 -1.4 367,295 - Dshi_0385 0.27 +1.4
Or see this region's nucleotide sequence