Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0379 and Dshi_0380 are separated by 49 nucleotides Dshi_0380 and Dshi_0381 are separated by 62 nucleotides
Dshi_0379: Dshi_0379 - inner-membrane translocator (RefSeq), at 361,062 to 362,138
_0379
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Dshi_0381: Dshi_0381 - ABC transporter related (RefSeq), at 363,531 to 364,355
_0381
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 361.262 kb on - strand, within Dshi_0379 at 361.307 kb on + strand, within Dshi_0379 at 361.310 kb on - strand, within Dshi_0379 at 361.322 kb on + strand, within Dshi_0379 at 361.383 kb on + strand, within Dshi_0379 at 361.415 kb on - strand, within Dshi_0379 at 361.539 kb on - strand, within Dshi_0379 at 361.547 kb on + strand, within Dshi_0379 at 361.555 kb on - strand, within Dshi_0379 at 361.753 kb on + strand, within Dshi_0379 at 361.761 kb on - strand, within Dshi_0379 at 362.000 kb on - strand, within Dshi_0379 at 362.068 kb on - strand at 362.142 kb on + strand at 362.264 kb on - strand at 362.280 kb on + strand at 362.286 kb on + strand at 362.371 kb on + strand, within Dshi_0380 at 362.413 kb on + strand, within Dshi_0380 at 362.439 kb on - strand, within Dshi_0380 at 362.478 kb on + strand, within Dshi_0380 at 362.500 kb on - strand, within Dshi_0380 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380 at 363.288 kb on - strand, within Dshi_0380 at 363.306 kb on - strand, within Dshi_0380 at 363.346 kb on + strand at 363.346 kb on + strand at 363.346 kb on + strand at 363.436 kb on + strand at 363.541 kb on - strand at 363.609 kb on + strand at 363.611 kb on + strand at 363.686 kb on - strand, within Dshi_0381 at 363.739 kb on + strand, within Dshi_0381 at 363.811 kb on - strand, within Dshi_0381 at 363.854 kb on - strand, within Dshi_0381 at 363.978 kb on + strand, within Dshi_0381 at 363.986 kb on - strand, within Dshi_0381 at 364.106 kb on - strand, within Dshi_0381 at 364.293 kb on - strand at 364.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 361,262 - Dshi_0379 0.19 +2.0 361,307 + Dshi_0379 0.23 -0.5 361,310 - Dshi_0379 0.23 +0.5 361,322 + Dshi_0379 0.24 +1.0 361,383 + Dshi_0379 0.30 +1.5 361,415 - Dshi_0379 0.33 -1.1 361,539 - Dshi_0379 0.44 +0.5 361,547 + Dshi_0379 0.45 -0.3 361,555 - Dshi_0379 0.46 -0.1 361,753 + Dshi_0379 0.64 -2.0 361,761 - Dshi_0379 0.65 +1.5 362,000 - Dshi_0379 0.87 +0.5 362,068 - +0.3 362,142 + -1.5 362,264 - -0.7 362,280 + -1.5 362,286 + -0.7 362,371 + Dshi_0380 0.14 -2.6 362,413 + Dshi_0380 0.18 -0.5 362,439 - Dshi_0380 0.20 -0.5 362,478 + Dshi_0380 0.23 -2.5 362,500 - Dshi_0380 0.24 +2.8 362,578 + Dshi_0380 0.30 +1.6 362,586 - Dshi_0380 0.31 +0.5 362,590 + Dshi_0380 0.31 -1.4 362,620 - Dshi_0380 0.34 +2.0 362,651 - Dshi_0380 0.36 +0.5 362,670 + Dshi_0380 0.38 -0.8 362,879 - Dshi_0380 0.54 +0.2 362,986 + Dshi_0380 0.62 -0.5 363,093 + Dshi_0380 0.71 -0.7 363,096 - Dshi_0380 0.71 -3.5 363,288 - Dshi_0380 0.86 -0.1 363,306 - Dshi_0380 0.87 -2.7 363,346 + +1.0 363,346 + +0.9 363,346 + +0.0 363,436 + -2.1 363,541 - +1.3 363,609 + +0.0 363,611 + +1.4 363,686 - Dshi_0381 0.19 -0.4 363,739 + Dshi_0381 0.25 +0.4 363,811 - Dshi_0381 0.34 +0.4 363,854 - Dshi_0381 0.39 -1.1 363,978 + Dshi_0381 0.54 -1.0 363,986 - Dshi_0381 0.55 -2.6 364,106 - Dshi_0381 0.70 -2.0 364,293 - -0.1 364,335 + -2.1
Or see this region's nucleotide sequence