Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0376 and Dshi_0377 are separated by 16 nucleotides Dshi_0377 and Dshi_0378 are separated by 242 nucleotides Dshi_0378 and Dshi_0379 are separated by 132 nucleotides Dshi_0379 and Dshi_0380 are separated by 49 nucleotides
Dshi_0376: Dshi_0376 - inner-membrane translocator (RefSeq), at 359,118 to 360,107
_0376
Dshi_0377: Dshi_0377 - hypothetical protein (RefSeq), at 360,124 to 360,432
_0377
Dshi_0378: Dshi_0378 - hypothetical protein (RefSeq), at 360,675 to 360,929
_0378
Dshi_0379: Dshi_0379 - inner-membrane translocator (RefSeq), at 361,062 to 362,138
_0379
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.102 kb on + strand at 360.108 kb on - strand at 360.130 kb on - strand at 360.198 kb on + strand, within Dshi_0377 at 360.247 kb on - strand, within Dshi_0377 at 360.398 kb on + strand, within Dshi_0377 at 360.452 kb on - strand at 360.535 kb on + strand at 360.632 kb on - strand at 360.839 kb on + strand, within Dshi_0378 at 360.910 kb on - strand at 360.910 kb on - strand at 360.947 kb on + strand at 360.952 kb on + strand at 360.995 kb on + strand at 361.003 kb on - strand at 361.043 kb on + strand at 361.048 kb on - strand at 361.093 kb on - strand at 361.109 kb on + strand at 361.150 kb on + strand at 361.152 kb on - strand at 361.155 kb on + strand at 361.262 kb on - strand, within Dshi_0379 at 361.307 kb on + strand, within Dshi_0379 at 361.310 kb on - strand, within Dshi_0379 at 361.322 kb on + strand, within Dshi_0379 at 361.383 kb on + strand, within Dshi_0379 at 361.415 kb on - strand, within Dshi_0379 at 361.539 kb on - strand, within Dshi_0379 at 361.547 kb on + strand, within Dshi_0379 at 361.555 kb on - strand, within Dshi_0379 at 361.753 kb on + strand, within Dshi_0379 at 361.761 kb on - strand, within Dshi_0379 at 362.000 kb on - strand, within Dshi_0379 at 362.068 kb on - strand at 362.142 kb on + strand at 362.264 kb on - strand at 362.280 kb on + strand at 362.286 kb on + strand at 362.371 kb on + strand, within Dshi_0380 at 362.413 kb on + strand, within Dshi_0380 at 362.439 kb on - strand, within Dshi_0380 at 362.478 kb on + strand, within Dshi_0380 at 362.500 kb on - strand, within Dshi_0380 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 360,102 + -2.7 360,108 - +0.2 360,130 - +0.5 360,198 + Dshi_0377 0.24 -0.8 360,247 - Dshi_0377 0.40 +0.5 360,398 + Dshi_0377 0.89 -2.1 360,452 - +1.9 360,535 + +2.6 360,632 - -0.6 360,839 + Dshi_0378 0.64 -2.7 360,910 - +1.0 360,910 - -1.3 360,947 + -2.5 360,952 + -0.5 360,995 + -1.1 361,003 - -1.5 361,043 + -1.1 361,048 - -1.5 361,093 - +2.0 361,109 + -1.4 361,150 + -0.5 361,152 - +0.5 361,155 + -1.1 361,262 - Dshi_0379 0.19 +2.0 361,307 + Dshi_0379 0.23 -0.5 361,310 - Dshi_0379 0.23 +0.5 361,322 + Dshi_0379 0.24 +1.0 361,383 + Dshi_0379 0.30 +1.5 361,415 - Dshi_0379 0.33 -1.1 361,539 - Dshi_0379 0.44 +0.5 361,547 + Dshi_0379 0.45 -0.3 361,555 - Dshi_0379 0.46 -0.1 361,753 + Dshi_0379 0.64 -2.0 361,761 - Dshi_0379 0.65 +1.5 362,000 - Dshi_0379 0.87 +0.5 362,068 - +0.3 362,142 + -1.5 362,264 - -0.7 362,280 + -1.5 362,286 + -0.7 362,371 + Dshi_0380 0.14 -2.6 362,413 + Dshi_0380 0.18 -0.5 362,439 - Dshi_0380 0.20 -0.5 362,478 + Dshi_0380 0.23 -2.5 362,500 - Dshi_0380 0.24 +2.8 362,578 + Dshi_0380 0.30 +1.6 362,586 - Dshi_0380 0.31 +0.5 362,590 + Dshi_0380 0.31 -1.4 362,620 - Dshi_0380 0.34 +2.0 362,651 - Dshi_0380 0.36 +0.5 362,670 + Dshi_0380 0.38 -0.8 362,879 - Dshi_0380 0.54 +0.2 362,986 + Dshi_0380 0.62 -0.5 363,093 + Dshi_0380 0.71 -0.7 363,096 - Dshi_0380 0.71 -3.5
Or see this region's nucleotide sequence