Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0117 and Dshi_0118 are separated by 46 nucleotides Dshi_0118 and Dshi_0119 are separated by 48 nucleotides Dshi_0119 and Dshi_0120 overlap by 4 nucleotides
Dshi_0117: Dshi_0117 - methionine aminopeptidase, type I (RefSeq), at 116,582 to 117,397
_0117
Dshi_0118: Dshi_0118 - sugar fermentation stimulation protein (RefSeq), at 117,444 to 118,178
_0118
Dshi_0119: Dshi_0119 - molybdopterin binding domain (RefSeq), at 118,227 to 118,955
_0119
Dshi_0120: Dshi_0120 - GCN5-related N-acetyltransferase (RefSeq), at 118,952 to 119,677
_0120
Position (kb)
117
118
119 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 116.491 kb on + strand at 116.545 kb on + strand at 116.553 kb on - strand at 116.562 kb on + strand at 116.570 kb on - strand at 117.368 kb on + strand at 117.508 kb on - strand at 117.609 kb on - strand, within Dshi_0118 at 117.615 kb on - strand, within Dshi_0118 at 117.617 kb on - strand, within Dshi_0118 at 117.721 kb on - strand, within Dshi_0118 at 117.736 kb on + strand, within Dshi_0118 at 117.744 kb on - strand, within Dshi_0118 at 117.776 kb on + strand, within Dshi_0118 at 117.867 kb on - strand, within Dshi_0118 at 117.952 kb on + strand, within Dshi_0118 at 117.956 kb on - strand, within Dshi_0118 at 118.096 kb on - strand, within Dshi_0118 at 118.101 kb on + strand, within Dshi_0118 at 118.109 kb on - strand at 118.109 kb on - strand at 118.180 kb on + strand at 118.185 kb on + strand at 118.187 kb on + strand at 118.193 kb on - strand at 118.195 kb on - strand at 118.216 kb on - strand at 118.216 kb on - strand at 118.216 kb on - strand at 118.217 kb on + strand at 118.225 kb on - strand at 118.289 kb on + strand at 118.378 kb on - strand, within Dshi_0119 at 118.589 kb on + strand, within Dshi_0119 at 118.611 kb on - strand, within Dshi_0119 at 118.642 kb on + strand, within Dshi_0119 at 118.753 kb on - strand, within Dshi_0119 at 118.755 kb on - strand, within Dshi_0119 at 119.007 kb on + strand at 119.016 kb on + strand at 119.041 kb on - strand, within Dshi_0120 at 119.121 kb on - strand, within Dshi_0120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 116,491 + -1.9 116,545 + +2.0 116,553 - -0.3 116,562 + -1.4 116,570 - -0.6 117,368 + +2.6 117,508 - -3.2 117,609 - Dshi_0118 0.22 +1.4 117,615 - Dshi_0118 0.23 -0.7 117,617 - Dshi_0118 0.24 -1.5 117,721 - Dshi_0118 0.38 +2.2 117,736 + Dshi_0118 0.40 +0.1 117,744 - Dshi_0118 0.41 -2.2 117,776 + Dshi_0118 0.45 -2.2 117,867 - Dshi_0118 0.58 +0.6 117,952 + Dshi_0118 0.69 -1.3 117,956 - Dshi_0118 0.70 -0.3 118,096 - Dshi_0118 0.89 -0.5 118,101 + Dshi_0118 0.89 -0.7 118,109 - -0.8 118,109 - -1.4 118,180 + -0.4 118,185 + +0.1 118,187 + -0.4 118,193 - +2.3 118,195 - -0.2 118,216 - -1.7 118,216 - -3.2 118,216 - -0.1 118,217 + -1.9 118,225 - -2.8 118,289 + +2.2 118,378 - Dshi_0119 0.21 -0.3 118,589 + Dshi_0119 0.50 -0.2 118,611 - Dshi_0119 0.53 -0.1 118,642 + Dshi_0119 0.57 +0.2 118,753 - Dshi_0119 0.72 -0.4 118,755 - Dshi_0119 0.72 +0.1 119,007 + -1.8 119,016 + -0.8 119,041 - Dshi_0120 0.12 -1.3 119,121 - Dshi_0120 0.23 -1.0
Or see this region's nucleotide sequence