Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0011

Experiment: m.b. benzoic 0.32 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0009 and Dshi_0010 are separated by 167 nucleotidesDshi_0010 and Dshi_0011 are separated by 134 nucleotidesDshi_0011 and Dshi_0012 are separated by 4 nucleotides Dshi_0009: Dshi_0009 - cold-shock DNA-binding domain protein (RefSeq), at 11,747 to 11,953 _0009 Dshi_0010: Dshi_0010 - protein of unknown function DUF305 (RefSeq), at 12,121 to 12,642 _0010 Dshi_0011: Dshi_0011 - hypothetical protein (RefSeq), at 12,777 to 13,124 _0011 Dshi_0012: Dshi_0012 - succinyl-diaminopimelate desuccinylase (RefSeq), at 13,129 to 14,268 _0012 Position (kb) 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2 3at 11.814 kb on - strand, within Dshi_0009at 11.820 kb on - strand, within Dshi_0009at 11.820 kb on - strand, within Dshi_0009at 11.824 kb on + strand, within Dshi_0009at 11.832 kb on - strand, within Dshi_0009at 11.832 kb on - strand, within Dshi_0009at 11.834 kb on + strand, within Dshi_0009at 11.842 kb on - strand, within Dshi_0009at 11.842 kb on - strand, within Dshi_0009at 11.842 kb on - strand, within Dshi_0009at 11.932 kb on + strand, within Dshi_0009at 11.942 kb on + strandat 11.961 kb on - strandat 11.989 kb on - strandat 12.007 kb on + strandat 12.008 kb on - strandat 12.026 kb on - strandat 12.033 kb on - strandat 12.033 kb on - strandat 12.059 kb on - strandat 12.070 kb on + strandat 12.076 kb on + strandat 12.078 kb on - strandat 12.078 kb on - strandat 12.078 kb on - strandat 12.078 kb on - strandat 12.078 kb on - strandat 12.106 kb on - strandat 12.152 kb on + strandat 12.201 kb on + strand, within Dshi_0010at 12.209 kb on - strand, within Dshi_0010at 12.234 kb on + strand, within Dshi_0010at 12.265 kb on + strand, within Dshi_0010at 12.312 kb on - strand, within Dshi_0010at 12.338 kb on - strand, within Dshi_0010at 12.338 kb on - strand, within Dshi_0010at 12.352 kb on - strand, within Dshi_0010at 12.357 kb on + strand, within Dshi_0010at 12.372 kb on - strand, within Dshi_0010at 12.377 kb on + strand, within Dshi_0010at 12.385 kb on - strand, within Dshi_0010at 12.453 kb on - strand, within Dshi_0010at 12.458 kb on + strand, within Dshi_0010at 12.458 kb on + strand, within Dshi_0010at 12.510 kb on + strand, within Dshi_0010at 12.517 kb on + strand, within Dshi_0010at 12.616 kb on + strandat 12.621 kb on + strandat 12.624 kb on - strandat 12.624 kb on - strandat 12.624 kb on - strandat 12.626 kb on + strandat 12.626 kb on + strandat 12.657 kb on + strandat 12.660 kb on + strandat 12.673 kb on + strandat 12.832 kb on - strand, within Dshi_0011at 13.133 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
remove
11,814 - Dshi_0009 0.32 -1.4
11,820 - Dshi_0009 0.35 -1.8
11,820 - Dshi_0009 0.35 -0.8
11,824 + Dshi_0009 0.37 -1.1
11,832 - Dshi_0009 0.41 +0.6
11,832 - Dshi_0009 0.41 -1.1
11,834 + Dshi_0009 0.42 -0.7
11,842 - Dshi_0009 0.46 -1.5
11,842 - Dshi_0009 0.46 -0.6
11,842 - Dshi_0009 0.46 +0.6
11,932 + Dshi_0009 0.89 -0.9
11,942 + +0.6
11,961 - -0.7
11,989 - -0.4
12,007 + -0.6
12,008 - -1.1
12,026 - +1.6
12,033 - +0.6
12,033 - -0.4
12,059 - +0.1
12,070 + -0.2
12,076 + -0.4
12,078 - -1.7
12,078 - -0.7
12,078 - -1.4
12,078 - +1.4
12,078 - -0.9
12,106 - -0.1
12,152 + +0.6
12,201 + Dshi_0010 0.15 -0.5
12,209 - Dshi_0010 0.17 +1.6
12,234 + Dshi_0010 0.22 -0.2
12,265 + Dshi_0010 0.28 -0.4
12,312 - Dshi_0010 0.37 -0.7
12,338 - Dshi_0010 0.42 -1.5
12,338 - Dshi_0010 0.42 -1.4
12,352 - Dshi_0010 0.44 -1.2
12,357 + Dshi_0010 0.45 -0.6
12,372 - Dshi_0010 0.48 -0.9
12,377 + Dshi_0010 0.49 -0.4
12,385 - Dshi_0010 0.51 +3.0
12,453 - Dshi_0010 0.64 +3.2
12,458 + Dshi_0010 0.65 +0.6
12,458 + Dshi_0010 0.65 -0.6
12,510 + Dshi_0010 0.75 -0.6
12,517 + Dshi_0010 0.76 +0.6
12,616 + +0.4
12,621 + +1.9
12,624 - +0.6
12,624 - -0.9
12,624 - -1.1
12,626 + +0.4
12,626 + -1.2
12,657 + +2.2
12,660 + +1.6
12,673 + -0.6
12,832 - Dshi_0011 0.16 -1.7
13,133 - -2.2

Or see this region's nucleotide sequence