Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0009 and Dshi_0010 are separated by 167 nucleotides Dshi_0010 and Dshi_0011 are separated by 134 nucleotides Dshi_0011 and Dshi_0012 are separated by 4 nucleotides
Dshi_0009: Dshi_0009 - cold-shock DNA-binding domain protein (RefSeq), at 11,747 to 11,953
_0009
Dshi_0010: Dshi_0010 - protein of unknown function DUF305 (RefSeq), at 12,121 to 12,642
_0010
Dshi_0011: Dshi_0011 - hypothetical protein (RefSeq), at 12,777 to 13,124
_0011
Dshi_0012: Dshi_0012 - succinyl-diaminopimelate desuccinylase (RefSeq), at 13,129 to 14,268
_0012
Position (kb)
12
13
14 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 11.814 kb on - strand, within Dshi_0009 at 11.820 kb on - strand, within Dshi_0009 at 11.820 kb on - strand, within Dshi_0009 at 11.824 kb on + strand, within Dshi_0009 at 11.832 kb on - strand, within Dshi_0009 at 11.832 kb on - strand, within Dshi_0009 at 11.834 kb on + strand, within Dshi_0009 at 11.842 kb on - strand, within Dshi_0009 at 11.842 kb on - strand, within Dshi_0009 at 11.842 kb on - strand, within Dshi_0009 at 11.932 kb on + strand, within Dshi_0009 at 11.942 kb on + strand at 11.961 kb on - strand at 11.989 kb on - strand at 12.007 kb on + strand at 12.008 kb on - strand at 12.026 kb on - strand at 12.033 kb on - strand at 12.033 kb on - strand at 12.059 kb on - strand at 12.070 kb on + strand at 12.076 kb on + strand at 12.078 kb on - strand at 12.078 kb on - strand at 12.078 kb on - strand at 12.078 kb on - strand at 12.078 kb on - strand at 12.106 kb on - strand at 12.152 kb on + strand at 12.201 kb on + strand, within Dshi_0010 at 12.209 kb on - strand, within Dshi_0010 at 12.234 kb on + strand, within Dshi_0010 at 12.265 kb on + strand, within Dshi_0010 at 12.312 kb on - strand, within Dshi_0010 at 12.338 kb on - strand, within Dshi_0010 at 12.338 kb on - strand, within Dshi_0010 at 12.352 kb on - strand, within Dshi_0010 at 12.357 kb on + strand, within Dshi_0010 at 12.372 kb on - strand, within Dshi_0010 at 12.377 kb on + strand, within Dshi_0010 at 12.385 kb on - strand, within Dshi_0010 at 12.453 kb on - strand, within Dshi_0010 at 12.458 kb on + strand, within Dshi_0010 at 12.458 kb on + strand, within Dshi_0010 at 12.510 kb on + strand, within Dshi_0010 at 12.517 kb on + strand, within Dshi_0010 at 12.616 kb on + strand at 12.621 kb on + strand at 12.624 kb on - strand at 12.624 kb on - strand at 12.624 kb on - strand at 12.626 kb on + strand at 12.626 kb on + strand at 12.657 kb on + strand at 12.660 kb on + strand at 12.673 kb on + strand at 12.832 kb on - strand, within Dshi_0011 at 13.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 11,814 - Dshi_0009 0.32 -1.4 11,820 - Dshi_0009 0.35 -1.8 11,820 - Dshi_0009 0.35 -0.8 11,824 + Dshi_0009 0.37 -1.1 11,832 - Dshi_0009 0.41 +0.6 11,832 - Dshi_0009 0.41 -1.1 11,834 + Dshi_0009 0.42 -0.7 11,842 - Dshi_0009 0.46 -1.5 11,842 - Dshi_0009 0.46 -0.6 11,842 - Dshi_0009 0.46 +0.6 11,932 + Dshi_0009 0.89 -0.9 11,942 + +0.6 11,961 - -0.7 11,989 - -0.4 12,007 + -0.6 12,008 - -1.1 12,026 - +1.6 12,033 - +0.6 12,033 - -0.4 12,059 - +0.1 12,070 + -0.2 12,076 + -0.4 12,078 - -1.7 12,078 - -0.7 12,078 - -1.4 12,078 - +1.4 12,078 - -0.9 12,106 - -0.1 12,152 + +0.6 12,201 + Dshi_0010 0.15 -0.5 12,209 - Dshi_0010 0.17 +1.6 12,234 + Dshi_0010 0.22 -0.2 12,265 + Dshi_0010 0.28 -0.4 12,312 - Dshi_0010 0.37 -0.7 12,338 - Dshi_0010 0.42 -1.5 12,338 - Dshi_0010 0.42 -1.4 12,352 - Dshi_0010 0.44 -1.2 12,357 + Dshi_0010 0.45 -0.6 12,372 - Dshi_0010 0.48 -0.9 12,377 + Dshi_0010 0.49 -0.4 12,385 - Dshi_0010 0.51 +3.0 12,453 - Dshi_0010 0.64 +3.2 12,458 + Dshi_0010 0.65 +0.6 12,458 + Dshi_0010 0.65 -0.6 12,510 + Dshi_0010 0.75 -0.6 12,517 + Dshi_0010 0.76 +0.6 12,616 + +0.4 12,621 + +1.9 12,624 - +0.6 12,624 - -0.9 12,624 - -1.1 12,626 + +0.4 12,626 + -1.2 12,657 + +2.2 12,660 + +1.6 12,673 + -0.6 12,832 - Dshi_0011 0.16 -1.7 13,133 - -2.2
Or see this region's nucleotide sequence