Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3783 and HP15_3784 are separated by 3 nucleotides HP15_3784 and HP15_3785 are separated by 225 nucleotides HP15_3785 and HP15_3786 are separated by 170 nucleotides
HP15_3783: HP15_3783 - RimK domain protein ATP-grasp, at 4,005,200 to 4,006,024
_3783
HP15_3784: HP15_3784 - hypothetical protein, at 4,006,028 to 4,006,240
_3784
HP15_3785: HP15_3785 - ornithine decarboxylase, at 4,006,466 to 4,007,641
_3785
HP15_3786: HP15_3786 - major facilitator superfamily MFS_1, at 4,007,812 to 4,009,014
_3786
Position (kb)
4006
4007
4008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4005.559 kb on + strand, within HP15_3783 at 4005.593 kb on + strand, within HP15_3783 at 4005.618 kb on + strand, within HP15_3783 at 4005.776 kb on - strand, within HP15_3783 at 4005.828 kb on - strand, within HP15_3783 at 4005.865 kb on + strand, within HP15_3783 at 4005.873 kb on - strand, within HP15_3783 at 4005.933 kb on - strand, within HP15_3783 at 4005.933 kb on - strand, within HP15_3783 at 4006.069 kb on + strand, within HP15_3784 at 4006.133 kb on - strand, within HP15_3784 at 4006.297 kb on + strand at 4006.350 kb on - strand at 4006.392 kb on + strand at 4006.392 kb on + strand at 4006.445 kb on - strand at 4006.450 kb on - strand at 4006.466 kb on - strand at 4006.575 kb on - strand at 4006.614 kb on - strand, within HP15_3785 at 4006.632 kb on - strand, within HP15_3785 at 4006.661 kb on + strand, within HP15_3785 at 4006.666 kb on + strand, within HP15_3785 at 4006.730 kb on - strand, within HP15_3785 at 4006.734 kb on - strand, within HP15_3785 at 4006.798 kb on + strand, within HP15_3785 at 4006.903 kb on - strand, within HP15_3785 at 4006.921 kb on + strand, within HP15_3785 at 4007.003 kb on - strand, within HP15_3785 at 4007.022 kb on - strand, within HP15_3785 at 4007.048 kb on - strand, within HP15_3785 at 4007.075 kb on + strand, within HP15_3785 at 4007.083 kb on - strand, within HP15_3785 at 4007.093 kb on - strand, within HP15_3785 at 4007.197 kb on + strand, within HP15_3785 at 4007.206 kb on - strand, within HP15_3785 at 4007.275 kb on - strand, within HP15_3785 at 4007.298 kb on + strand, within HP15_3785 at 4007.298 kb on + strand, within HP15_3785 at 4007.390 kb on - strand, within HP15_3785 at 4007.450 kb on + strand, within HP15_3785 at 4007.450 kb on + strand, within HP15_3785 at 4007.458 kb on - strand, within HP15_3785 at 4007.571 kb on - strand at 4007.592 kb on + strand at 4007.678 kb on - strand at 4007.692 kb on + strand at 4007.742 kb on + strand at 4007.865 kb on - strand at 4007.885 kb on - strand at 4007.937 kb on - strand, within HP15_3786 at 4007.977 kb on - strand, within HP15_3786 at 4008.053 kb on + strand, within HP15_3786 at 4008.084 kb on - strand, within HP15_3786 at 4008.193 kb on - strand, within HP15_3786 at 4008.239 kb on - strand, within HP15_3786 at 4008.304 kb on - strand, within HP15_3786 at 4008.373 kb on - strand, within HP15_3786 at 4008.406 kb on - strand, within HP15_3786 at 4008.436 kb on + strand, within HP15_3786 at 4008.436 kb on + strand, within HP15_3786 at 4008.460 kb on + strand, within HP15_3786 at 4008.568 kb on + strand, within HP15_3786 at 4008.619 kb on + strand, within HP15_3786
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 4,005,559 + HP15_3783 0.44 +0.7 4,005,593 + HP15_3783 0.48 -0.3 4,005,618 + HP15_3783 0.51 +1.2 4,005,776 - HP15_3783 0.70 -0.2 4,005,828 - HP15_3783 0.76 +0.1 4,005,865 + HP15_3783 0.81 -1.2 4,005,873 - HP15_3783 0.82 -0.2 4,005,933 - HP15_3783 0.89 -0.5 4,005,933 - HP15_3783 0.89 +0.3 4,006,069 + HP15_3784 0.19 -0.7 4,006,133 - HP15_3784 0.49 +1.0 4,006,297 + +0.6 4,006,350 - +0.4 4,006,392 + +0.4 4,006,392 + -2.2 4,006,445 - -0.2 4,006,450 - -1.0 4,006,466 - -0.3 4,006,575 - +0.2 4,006,614 - HP15_3785 0.13 -0.2 4,006,632 - HP15_3785 0.14 +0.8 4,006,661 + HP15_3785 0.17 -0.6 4,006,666 + HP15_3785 0.17 -0.5 4,006,730 - HP15_3785 0.22 +0.1 4,006,734 - HP15_3785 0.23 -0.3 4,006,798 + HP15_3785 0.28 +0.1 4,006,903 - HP15_3785 0.37 +0.4 4,006,921 + HP15_3785 0.39 +2.3 4,007,003 - HP15_3785 0.46 -0.5 4,007,022 - HP15_3785 0.47 +1.3 4,007,048 - HP15_3785 0.49 -0.0 4,007,075 + HP15_3785 0.52 +0.7 4,007,083 - HP15_3785 0.52 -0.8 4,007,093 - HP15_3785 0.53 -0.8 4,007,197 + HP15_3785 0.62 +0.1 4,007,206 - HP15_3785 0.63 +0.2 4,007,275 - HP15_3785 0.69 +0.9 4,007,298 + HP15_3785 0.71 +0.4 4,007,298 + HP15_3785 0.71 -0.4 4,007,390 - HP15_3785 0.79 -0.2 4,007,450 + HP15_3785 0.84 +2.1 4,007,450 + HP15_3785 0.84 +1.1 4,007,458 - HP15_3785 0.84 +0.9 4,007,571 - -0.2 4,007,592 + +1.4 4,007,678 - -0.1 4,007,692 + -0.6 4,007,742 + +1.7 4,007,865 - +0.4 4,007,885 - -0.2 4,007,937 - HP15_3786 0.10 +0.9 4,007,977 - HP15_3786 0.14 -0.3 4,008,053 + HP15_3786 0.20 +0.6 4,008,084 - HP15_3786 0.23 +1.0 4,008,193 - HP15_3786 0.32 +0.0 4,008,239 - HP15_3786 0.35 -0.2 4,008,304 - HP15_3786 0.41 +0.4 4,008,373 - HP15_3786 0.47 +0.4 4,008,406 - HP15_3786 0.49 +0.9 4,008,436 + HP15_3786 0.52 -0.1 4,008,436 + HP15_3786 0.52 +0.8 4,008,460 + HP15_3786 0.54 -0.8 4,008,568 + HP15_3786 0.63 +0.4 4,008,619 + HP15_3786 0.67 -0.4
Or see this region's nucleotide sequence