Strain Fitness in Marinobacter adhaerens HP15 around HP15_3399

Experiment: L-Phenylalanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3398 and HP15_3399 are separated by 1 nucleotidesHP15_3399 and HP15_3400 are separated by 46 nucleotidesHP15_3400 and HP15_3401 are separated by 91 nucleotides HP15_3398: HP15_3398 - major facilitator superfamily MFS_1, at 3,568,636 to 3,569,829 _3398 HP15_3399: HP15_3399 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 3,569,831 to 3,570,835 _3399 HP15_3400: HP15_3400 - transcriptional regulator, ArsR family protein, at 3,570,882 to 3,571,646 _3400 HP15_3401: HP15_3401 - sodium bile acid symporter family protein, at 3,571,738 to 3,572,808 _3401 Position (kb) 3569 3570 3571Strain fitness (log2 ratio) -2 -1 0 1 2at 3568.914 kb on + strand, within HP15_3398at 3568.918 kb on + strand, within HP15_3398at 3568.985 kb on + strand, within HP15_3398at 3568.993 kb on - strand, within HP15_3398at 3568.998 kb on - strand, within HP15_3398at 3569.042 kb on - strand, within HP15_3398at 3569.046 kb on + strand, within HP15_3398at 3569.142 kb on + strand, within HP15_3398at 3569.176 kb on + strand, within HP15_3398at 3569.184 kb on - strand, within HP15_3398at 3569.243 kb on + strand, within HP15_3398at 3569.267 kb on - strand, within HP15_3398at 3569.267 kb on - strand, within HP15_3398at 3569.270 kb on + strand, within HP15_3398at 3569.374 kb on + strand, within HP15_3398at 3569.420 kb on + strand, within HP15_3398at 3569.482 kb on + strand, within HP15_3398at 3569.526 kb on + strand, within HP15_3398at 3569.531 kb on + strand, within HP15_3398at 3569.605 kb on - strand, within HP15_3398at 3569.615 kb on - strand, within HP15_3398at 3569.617 kb on + strand, within HP15_3398at 3569.625 kb on - strand, within HP15_3398at 3569.625 kb on - strand, within HP15_3398at 3569.692 kb on + strand, within HP15_3398at 3569.773 kb on + strandat 3569.809 kb on - strandat 3569.839 kb on + strandat 3569.839 kb on + strandat 3569.839 kb on + strandat 3569.915 kb on - strandat 3570.139 kb on + strand, within HP15_3399at 3570.502 kb on + strand, within HP15_3399at 3570.522 kb on + strand, within HP15_3399at 3570.522 kb on + strand, within HP15_3399at 3570.607 kb on - strand, within HP15_3399at 3570.754 kb on + strandat 3570.764 kb on + strandat 3570.851 kb on + strandat 3570.918 kb on - strandat 3571.063 kb on - strand, within HP15_3400at 3571.084 kb on + strand, within HP15_3400at 3571.091 kb on + strand, within HP15_3400at 3571.106 kb on + strand, within HP15_3400at 3571.174 kb on - strand, within HP15_3400at 3571.183 kb on - strand, within HP15_3400at 3571.190 kb on - strand, within HP15_3400at 3571.203 kb on - strand, within HP15_3400at 3571.266 kb on - strand, within HP15_3400at 3571.352 kb on - strand, within HP15_3400at 3571.396 kb on - strand, within HP15_3400at 3571.417 kb on - strand, within HP15_3400at 3571.459 kb on - strand, within HP15_3400at 3571.475 kb on - strand, within HP15_3400at 3571.507 kb on + strand, within HP15_3400at 3571.515 kb on - strand, within HP15_3400at 3571.524 kb on + strand, within HP15_3400at 3571.609 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
remove
3,568,914 + HP15_3398 0.23 +1.2
3,568,918 + HP15_3398 0.24 -0.6
3,568,985 + HP15_3398 0.29 -0.4
3,568,993 - HP15_3398 0.30 -2.2
3,568,998 - HP15_3398 0.30 -0.8
3,569,042 - HP15_3398 0.34 +1.3
3,569,046 + HP15_3398 0.34 +0.1
3,569,142 + HP15_3398 0.42 -0.5
3,569,176 + HP15_3398 0.45 -0.1
3,569,184 - HP15_3398 0.46 -0.1
3,569,243 + HP15_3398 0.51 +1.1
3,569,267 - HP15_3398 0.53 +0.2
3,569,267 - HP15_3398 0.53 +0.1
3,569,270 + HP15_3398 0.53 -0.2
3,569,374 + HP15_3398 0.62 -0.5
3,569,420 + HP15_3398 0.66 +1.7
3,569,482 + HP15_3398 0.71 -0.5
3,569,526 + HP15_3398 0.75 +1.2
3,569,531 + HP15_3398 0.75 +0.1
3,569,605 - HP15_3398 0.81 +0.4
3,569,615 - HP15_3398 0.82 -0.1
3,569,617 + HP15_3398 0.82 +1.2
3,569,625 - HP15_3398 0.83 -0.7
3,569,625 - HP15_3398 0.83 -0.5
3,569,692 + HP15_3398 0.88 +1.7
3,569,773 + -0.3
3,569,809 - -0.4
3,569,839 + +1.2
3,569,839 + -0.3
3,569,839 + -0.9
3,569,915 - -0.9
3,570,139 + HP15_3399 0.31 +0.8
3,570,502 + HP15_3399 0.67 +1.0
3,570,522 + HP15_3399 0.69 -0.5
3,570,522 + HP15_3399 0.69 -0.2
3,570,607 - HP15_3399 0.77 -0.2
3,570,754 + +1.1
3,570,764 + -0.3
3,570,851 + +1.8
3,570,918 - -0.8
3,571,063 - HP15_3400 0.24 -0.5
3,571,084 + HP15_3400 0.26 -0.3
3,571,091 + HP15_3400 0.27 +0.3
3,571,106 + HP15_3400 0.29 -0.1
3,571,174 - HP15_3400 0.38 +0.0
3,571,183 - HP15_3400 0.39 +0.1
3,571,190 - HP15_3400 0.40 -0.0
3,571,203 - HP15_3400 0.42 +0.6
3,571,266 - HP15_3400 0.50 -0.7
3,571,352 - HP15_3400 0.61 +0.4
3,571,396 - HP15_3400 0.67 +1.2
3,571,417 - HP15_3400 0.70 +0.4
3,571,459 - HP15_3400 0.75 +0.2
3,571,475 - HP15_3400 0.78 -1.6
3,571,507 + HP15_3400 0.82 -0.2
3,571,515 - HP15_3400 0.83 -0.0
3,571,524 + HP15_3400 0.84 -0.2
3,571,609 + -0.2

Or see this region's nucleotide sequence