Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3398 and HP15_3399 are separated by 1 nucleotides HP15_3399 and HP15_3400 are separated by 46 nucleotides HP15_3400 and HP15_3401 are separated by 91 nucleotides
HP15_3398: HP15_3398 - major facilitator superfamily MFS_1, at 3,568,636 to 3,569,829
_3398
HP15_3399: HP15_3399 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 3,569,831 to 3,570,835
_3399
HP15_3400: HP15_3400 - transcriptional regulator, ArsR family protein, at 3,570,882 to 3,571,646
_3400
HP15_3401: HP15_3401 - sodium bile acid symporter family protein, at 3,571,738 to 3,572,808
_3401
Position (kb)
3569
3570
3571 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3568.914 kb on + strand, within HP15_3398 at 3568.918 kb on + strand, within HP15_3398 at 3568.985 kb on + strand, within HP15_3398 at 3568.993 kb on - strand, within HP15_3398 at 3568.998 kb on - strand, within HP15_3398 at 3569.042 kb on - strand, within HP15_3398 at 3569.046 kb on + strand, within HP15_3398 at 3569.142 kb on + strand, within HP15_3398 at 3569.176 kb on + strand, within HP15_3398 at 3569.184 kb on - strand, within HP15_3398 at 3569.243 kb on + strand, within HP15_3398 at 3569.267 kb on - strand, within HP15_3398 at 3569.267 kb on - strand, within HP15_3398 at 3569.270 kb on + strand, within HP15_3398 at 3569.374 kb on + strand, within HP15_3398 at 3569.420 kb on + strand, within HP15_3398 at 3569.482 kb on + strand, within HP15_3398 at 3569.526 kb on + strand, within HP15_3398 at 3569.531 kb on + strand, within HP15_3398 at 3569.605 kb on - strand, within HP15_3398 at 3569.615 kb on - strand, within HP15_3398 at 3569.617 kb on + strand, within HP15_3398 at 3569.625 kb on - strand, within HP15_3398 at 3569.625 kb on - strand, within HP15_3398 at 3569.692 kb on + strand, within HP15_3398 at 3569.773 kb on + strand at 3569.809 kb on - strand at 3569.839 kb on + strand at 3569.839 kb on + strand at 3569.839 kb on + strand at 3569.915 kb on - strand at 3570.139 kb on + strand, within HP15_3399 at 3570.502 kb on + strand, within HP15_3399 at 3570.522 kb on + strand, within HP15_3399 at 3570.522 kb on + strand, within HP15_3399 at 3570.607 kb on - strand, within HP15_3399 at 3570.754 kb on + strand at 3570.764 kb on + strand at 3570.851 kb on + strand at 3570.918 kb on - strand at 3571.063 kb on - strand, within HP15_3400 at 3571.084 kb on + strand, within HP15_3400 at 3571.091 kb on + strand, within HP15_3400 at 3571.106 kb on + strand, within HP15_3400 at 3571.174 kb on - strand, within HP15_3400 at 3571.183 kb on - strand, within HP15_3400 at 3571.190 kb on - strand, within HP15_3400 at 3571.203 kb on - strand, within HP15_3400 at 3571.266 kb on - strand, within HP15_3400 at 3571.352 kb on - strand, within HP15_3400 at 3571.396 kb on - strand, within HP15_3400 at 3571.417 kb on - strand, within HP15_3400 at 3571.459 kb on - strand, within HP15_3400 at 3571.475 kb on - strand, within HP15_3400 at 3571.507 kb on + strand, within HP15_3400 at 3571.515 kb on - strand, within HP15_3400 at 3571.524 kb on + strand, within HP15_3400 at 3571.609 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 3,568,914 + HP15_3398 0.23 +1.2 3,568,918 + HP15_3398 0.24 -0.6 3,568,985 + HP15_3398 0.29 -0.4 3,568,993 - HP15_3398 0.30 -2.2 3,568,998 - HP15_3398 0.30 -0.8 3,569,042 - HP15_3398 0.34 +1.3 3,569,046 + HP15_3398 0.34 +0.1 3,569,142 + HP15_3398 0.42 -0.5 3,569,176 + HP15_3398 0.45 -0.1 3,569,184 - HP15_3398 0.46 -0.1 3,569,243 + HP15_3398 0.51 +1.1 3,569,267 - HP15_3398 0.53 +0.2 3,569,267 - HP15_3398 0.53 +0.1 3,569,270 + HP15_3398 0.53 -0.2 3,569,374 + HP15_3398 0.62 -0.5 3,569,420 + HP15_3398 0.66 +1.7 3,569,482 + HP15_3398 0.71 -0.5 3,569,526 + HP15_3398 0.75 +1.2 3,569,531 + HP15_3398 0.75 +0.1 3,569,605 - HP15_3398 0.81 +0.4 3,569,615 - HP15_3398 0.82 -0.1 3,569,617 + HP15_3398 0.82 +1.2 3,569,625 - HP15_3398 0.83 -0.7 3,569,625 - HP15_3398 0.83 -0.5 3,569,692 + HP15_3398 0.88 +1.7 3,569,773 + -0.3 3,569,809 - -0.4 3,569,839 + +1.2 3,569,839 + -0.3 3,569,839 + -0.9 3,569,915 - -0.9 3,570,139 + HP15_3399 0.31 +0.8 3,570,502 + HP15_3399 0.67 +1.0 3,570,522 + HP15_3399 0.69 -0.5 3,570,522 + HP15_3399 0.69 -0.2 3,570,607 - HP15_3399 0.77 -0.2 3,570,754 + +1.1 3,570,764 + -0.3 3,570,851 + +1.8 3,570,918 - -0.8 3,571,063 - HP15_3400 0.24 -0.5 3,571,084 + HP15_3400 0.26 -0.3 3,571,091 + HP15_3400 0.27 +0.3 3,571,106 + HP15_3400 0.29 -0.1 3,571,174 - HP15_3400 0.38 +0.0 3,571,183 - HP15_3400 0.39 +0.1 3,571,190 - HP15_3400 0.40 -0.0 3,571,203 - HP15_3400 0.42 +0.6 3,571,266 - HP15_3400 0.50 -0.7 3,571,352 - HP15_3400 0.61 +0.4 3,571,396 - HP15_3400 0.67 +1.2 3,571,417 - HP15_3400 0.70 +0.4 3,571,459 - HP15_3400 0.75 +0.2 3,571,475 - HP15_3400 0.78 -1.6 3,571,507 + HP15_3400 0.82 -0.2 3,571,515 - HP15_3400 0.83 -0.0 3,571,524 + HP15_3400 0.84 -0.2 3,571,609 + -0.2
Or see this region's nucleotide sequence