Strain Fitness in Marinobacter adhaerens HP15 around HP15_3222

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3220 and HP15_3221 are separated by 27 nucleotidesHP15_3221 and HP15_3222 are separated by 18 nucleotidesHP15_3222 and HP15_3223 are separated by 2 nucleotidesHP15_3223 and HP15_3224 are separated by 61 nucleotides HP15_3220: HP15_3220 - dehydroquinase, class II, at 3,373,110 to 3,373,511 _3220 HP15_3221: HP15_3221 - acetyl-CoA biotin carboxyl carrier, at 3,373,539 to 3,374,006 _3221 HP15_3222: HP15_3222 - acetyl-CoA carboxylase biotin carboxylase subunit, at 3,374,025 to 3,375,371 _3222 HP15_3223: HP15_3223 - ribosomal protein L11 methyltransferase, at 3,375,374 to 3,376,270 _3223 HP15_3224: HP15_3224 - family finger-like protein, at 3,376,332 to 3,377,588 _3224 Position (kb) 3374 3375 3376Strain fitness (log2 ratio) -1 0 1at 3375.389 kb on - strandat 3375.404 kb on + strandat 3375.404 kb on + strandat 3375.490 kb on - strand, within HP15_3223at 3375.577 kb on + strand, within HP15_3223at 3375.600 kb on + strand, within HP15_3223at 3375.639 kb on + strand, within HP15_3223at 3375.669 kb on - strand, within HP15_3223at 3375.673 kb on + strand, within HP15_3223at 3375.723 kb on - strand, within HP15_3223at 3375.916 kb on - strand, within HP15_3223at 3375.924 kb on - strand, within HP15_3223at 3375.928 kb on - strand, within HP15_3223at 3375.962 kb on + strand, within HP15_3223at 3376.014 kb on - strand, within HP15_3223at 3376.021 kb on + strand, within HP15_3223at 3376.056 kb on + strand, within HP15_3223at 3376.103 kb on - strand, within HP15_3223at 3376.223 kb on - strandat 3376.223 kb on - strandat 3376.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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3,375,389 - +0.5
3,375,404 + +0.2
3,375,404 + +0.6
3,375,490 - HP15_3223 0.13 +0.3
3,375,577 + HP15_3223 0.23 +0.1
3,375,600 + HP15_3223 0.25 -0.9
3,375,639 + HP15_3223 0.30 +0.5
3,375,669 - HP15_3223 0.33 +0.2
3,375,673 + HP15_3223 0.33 +1.3
3,375,723 - HP15_3223 0.39 -0.3
3,375,916 - HP15_3223 0.60 -0.2
3,375,924 - HP15_3223 0.61 +0.4
3,375,928 - HP15_3223 0.62 +0.1
3,375,962 + HP15_3223 0.66 -0.4
3,376,014 - HP15_3223 0.71 -0.7
3,376,021 + HP15_3223 0.72 -0.6
3,376,056 + HP15_3223 0.76 -1.1
3,376,103 - HP15_3223 0.81 +0.0
3,376,223 - +1.2
3,376,223 - +0.9
3,376,316 - +0.8

Or see this region's nucleotide sequence