Strain Fitness in Marinobacter adhaerens HP15 around HP15_2913

Experiment: L-Phenylalanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2912 and HP15_2913 overlap by 1 nucleotidesHP15_2913 and HP15_2914 are separated by 235 nucleotides HP15_2912: HP15_2912 - glyceraldehyde 3-phosphate dehydrogenase, type I, at 3,049,654 to 3,050,685 _2912 HP15_2913: HP15_2913 - bacterial transketolase, at 3,050,685 to 3,052,685 _2913 HP15_2914: HP15_2914 - protein containing Methyltransferase type 11 domain, at 3,052,921 to 3,053,922 _2914 Position (kb) 3050 3051 3052 3053Strain fitness (log2 ratio) -1 0 1at 3053.019 kb on - strandat 3053.112 kb on + strand, within HP15_2914at 3053.112 kb on + strand, within HP15_2914at 3053.112 kb on + strand, within HP15_2914at 3053.291 kb on + strand, within HP15_2914at 3053.296 kb on + strand, within HP15_2914at 3053.301 kb on + strand, within HP15_2914at 3053.392 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.552 kb on - strand, within HP15_2914at 3053.588 kb on - strand, within HP15_2914at 3053.607 kb on + strand, within HP15_2914at 3053.610 kb on - strand, within HP15_2914at 3053.661 kb on + strand, within HP15_2914

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
remove
3,053,019 - -0.3
3,053,112 + HP15_2914 0.19 +1.3
3,053,112 + HP15_2914 0.19 +0.1
3,053,112 + HP15_2914 0.19 -1.4
3,053,291 + HP15_2914 0.37 +0.9
3,053,296 + HP15_2914 0.37 -1.3
3,053,301 + HP15_2914 0.38 +0.1
3,053,392 + HP15_2914 0.47 +0.1
3,053,529 + HP15_2914 0.61 -1.3
3,053,529 + HP15_2914 0.61 -0.1
3,053,529 + HP15_2914 0.61 -0.3
3,053,552 - HP15_2914 0.63 -0.1
3,053,588 - HP15_2914 0.67 +0.3
3,053,607 + HP15_2914 0.68 +1.3
3,053,610 - HP15_2914 0.69 -0.3
3,053,661 + HP15_2914 0.74 +0.4

Or see this region's nucleotide sequence