Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2385 and HP15_2386 are separated by 28 nucleotides HP15_2386 and HP15_2387 are separated by 8 nucleotides HP15_2387 and HP15_2388 are separated by 1 nucleotides
HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223
_2385
HP15_2386: HP15_2386 - UDP-glucose 4-epimerase, at 2,516,252 to 2,517,208
_2386
HP15_2387: HP15_2387 - dTDP-glucose 4-6-dehydratase, at 2,517,217 to 2,518,164
_2387
HP15_2388: HP15_2388 - glycosyl transferase-like protein, at 2,518,166 to 2,518,474
_2388
Position (kb)
2516
2517
2518 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2515.317 kb on + strand, within HP15_2385 at 2515.416 kb on + strand, within HP15_2385 at 2515.456 kb on - strand, within HP15_2385 at 2515.529 kb on + strand, within HP15_2385 at 2515.571 kb on + strand, within HP15_2385 at 2515.571 kb on + strand, within HP15_2385 at 2515.670 kb on - strand, within HP15_2385 at 2515.746 kb on + strand, within HP15_2385 at 2515.755 kb on - strand, within HP15_2385 at 2515.756 kb on + strand, within HP15_2385 at 2515.773 kb on + strand, within HP15_2385 at 2515.775 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand at 2515.832 kb on + strand, within HP15_2385 at 2515.840 kb on - strand, within HP15_2385 at 2515.916 kb on - strand, within HP15_2385 at 2515.924 kb on + strand, within HP15_2385 at 2516.001 kb on - strand, within HP15_2385 at 2516.051 kb on - strand, within HP15_2385 at 2516.180 kb on + strand at 2516.195 kb on + strand at 2516.402 kb on + strand, within HP15_2386 at 2516.402 kb on + strand, within HP15_2386 at 2516.402 kb on + strand, within HP15_2386 at 2516.410 kb on - strand, within HP15_2386 at 2516.460 kb on + strand, within HP15_2386 at 2516.461 kb on + strand, within HP15_2386 at 2516.493 kb on + strand, within HP15_2386 at 2516.510 kb on - strand, within HP15_2386 at 2516.605 kb on + strand, within HP15_2386 at 2516.613 kb on - strand, within HP15_2386 at 2516.619 kb on + strand, within HP15_2386 at 2516.736 kb on - strand, within HP15_2386 at 2516.761 kb on + strand, within HP15_2386 at 2516.793 kb on - strand, within HP15_2386 at 2516.839 kb on - strand, within HP15_2386 at 2516.891 kb on + strand, within HP15_2386 at 2517.067 kb on + strand, within HP15_2386 at 2517.081 kb on + strand, within HP15_2386 at 2517.082 kb on - strand, within HP15_2386 at 2517.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 2,515,317 + HP15_2385 0.23 -0.8 2,515,416 + HP15_2385 0.31 -0.0 2,515,456 - HP15_2385 0.35 +1.0 2,515,529 + HP15_2385 0.41 +0.9 2,515,571 + HP15_2385 0.44 -0.9 2,515,571 + HP15_2385 0.44 +1.1 2,515,670 - HP15_2385 0.53 +1.0 2,515,746 + HP15_2385 0.59 +0.6 2,515,755 - HP15_2385 0.60 -0.1 2,515,756 + HP15_2385 0.60 -0.9 2,515,773 + HP15_2385 0.62 -0.9 2,515,775 + HP15_2385 0.62 -0.2 2,515,832 + HP15_2385 0.67 +0.5 2,515,832 + HP15_2385 0.67 +0.1 2,515,832 + HP15_2385 0.67 +1.1 2,515,832 + +0.5 2,515,832 + HP15_2385 0.67 -1.9 2,515,840 - HP15_2385 0.67 -0.5 2,515,916 - HP15_2385 0.74 -0.3 2,515,924 + HP15_2385 0.74 -0.6 2,516,001 - HP15_2385 0.81 +0.7 2,516,051 - HP15_2385 0.85 +1.5 2,516,180 + -1.1 2,516,195 + +1.4 2,516,402 + HP15_2386 0.16 -2.9 2,516,402 + HP15_2386 0.16 -1.2 2,516,402 + HP15_2386 0.16 -1.1 2,516,410 - HP15_2386 0.17 -2.1 2,516,460 + HP15_2386 0.22 -1.3 2,516,461 + HP15_2386 0.22 -4.0 2,516,493 + HP15_2386 0.25 -5.3 2,516,510 - HP15_2386 0.27 -3.0 2,516,605 + HP15_2386 0.37 -1.4 2,516,613 - HP15_2386 0.38 -1.1 2,516,619 + HP15_2386 0.38 -2.3 2,516,736 - HP15_2386 0.51 -4.6 2,516,761 + HP15_2386 0.53 -3.2 2,516,793 - HP15_2386 0.57 -2.3 2,516,839 - HP15_2386 0.61 -0.9 2,516,891 + HP15_2386 0.67 -1.1 2,517,067 + HP15_2386 0.85 -1.5 2,517,081 + HP15_2386 0.87 -3.5 2,517,082 - HP15_2386 0.87 -1.8 2,517,157 + -1.9
Or see this region's nucleotide sequence