Strain Fitness in Marinobacter adhaerens HP15 around HP15_2255

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2253 and HP15_2254 are separated by 5 nucleotidesHP15_2254 and HP15_2255 are separated by 130 nucleotidesHP15_2255 and HP15_2256 overlap by 9 nucleotidesHP15_2256 and HP15_2257 are separated by 109 nucleotides HP15_2253: HP15_2253 - Na(+)-translocating NADH-quinone reductase subunit A, at 2,373,119 to 2,374,465 _2253 HP15_2254: HP15_2254 - hypothetical protein, at 2,374,471 to 2,374,605 _2254 HP15_2255: HP15_2255 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,374,736 to 2,376,205 _2255 HP15_2256: HP15_2256 - hypothetical protein, at 2,376,197 to 2,376,316 _2256 HP15_2257: HP15_2257 - transcription-repair-coupling factor, at 2,376,426 to 2,379,959 _2257 Position (kb) 2374 2375 2376 2377Strain fitness (log2 ratio) -1 0 1 2at 2374.672 kb on + strandat 2374.714 kb on - strandat 2374.734 kb on + strandat 2376.428 kb on + strandat 2376.469 kb on - strandat 2376.469 kb on - strandat 2376.581 kb on - strandat 2376.581 kb on - strandat 2376.581 kb on - strandat 2376.728 kb on - strandat 2376.763 kb on - strandat 2376.820 kb on + strand, within HP15_2257at 2376.869 kb on + strand, within HP15_2257at 2376.919 kb on + strand, within HP15_2257at 2377.039 kb on + strand, within HP15_2257at 2377.047 kb on - strand, within HP15_2257at 2377.097 kb on + strand, within HP15_2257at 2377.105 kb on - strand, within HP15_2257at 2377.128 kb on - strand, within HP15_2257at 2377.189 kb on + strand, within HP15_2257

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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2,374,672 + -0.3
2,374,714 - -0.2
2,374,734 + +0.3
2,376,428 + +0.9
2,376,469 - -0.2
2,376,469 - -0.7
2,376,581 - -0.0
2,376,581 - -0.1
2,376,581 - -1.5
2,376,728 - -0.5
2,376,763 - -0.6
2,376,820 + HP15_2257 0.11 -1.1
2,376,869 + HP15_2257 0.13 +1.0
2,376,919 + HP15_2257 0.14 +1.2
2,377,039 + HP15_2257 0.17 +1.3
2,377,047 - HP15_2257 0.18 +1.1
2,377,097 + HP15_2257 0.19 -0.1
2,377,105 - HP15_2257 0.19 +1.1
2,377,128 - HP15_2257 0.20 +0.2
2,377,189 + HP15_2257 0.22 +1.8

Or see this region's nucleotide sequence