Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2253 and HP15_2254 are separated by 5 nucleotides HP15_2254 and HP15_2255 are separated by 130 nucleotides HP15_2255 and HP15_2256 overlap by 9 nucleotides HP15_2256 and HP15_2257 are separated by 109 nucleotides
HP15_2253: HP15_2253 - Na(+)-translocating NADH-quinone reductase subunit A, at 2,373,119 to 2,374,465
_2253
HP15_2254: HP15_2254 - hypothetical protein, at 2,374,471 to 2,374,605
_2254
HP15_2255: HP15_2255 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,374,736 to 2,376,205
_2255
HP15_2256: HP15_2256 - hypothetical protein, at 2,376,197 to 2,376,316
_2256
HP15_2257: HP15_2257 - transcription-repair-coupling factor, at 2,376,426 to 2,379,959
_2257
Position (kb)
2374
2375
2376
2377 Strain fitness (log2 ratio)
-1
0
1
2 at 2374.672 kb on + strand at 2374.714 kb on - strand at 2374.734 kb on + strand at 2376.428 kb on + strand at 2376.469 kb on - strand at 2376.469 kb on - strand at 2376.581 kb on - strand at 2376.581 kb on - strand at 2376.581 kb on - strand at 2376.728 kb on - strand at 2376.763 kb on - strand at 2376.820 kb on + strand, within HP15_2257 at 2376.869 kb on + strand, within HP15_2257 at 2376.919 kb on + strand, within HP15_2257 at 2377.039 kb on + strand, within HP15_2257 at 2377.047 kb on - strand, within HP15_2257 at 2377.097 kb on + strand, within HP15_2257 at 2377.105 kb on - strand, within HP15_2257 at 2377.128 kb on - strand, within HP15_2257 at 2377.189 kb on + strand, within HP15_2257
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 2,374,672 + -0.3 2,374,714 - -0.2 2,374,734 + +0.3 2,376,428 + +0.9 2,376,469 - -0.2 2,376,469 - -0.7 2,376,581 - -0.0 2,376,581 - -0.1 2,376,581 - -1.5 2,376,728 - -0.5 2,376,763 - -0.6 2,376,820 + HP15_2257 0.11 -1.1 2,376,869 + HP15_2257 0.13 +1.0 2,376,919 + HP15_2257 0.14 +1.2 2,377,039 + HP15_2257 0.17 +1.3 2,377,047 - HP15_2257 0.18 +1.1 2,377,097 + HP15_2257 0.19 -0.1 2,377,105 - HP15_2257 0.19 +1.1 2,377,128 - HP15_2257 0.20 +0.2 2,377,189 + HP15_2257 0.22 +1.8
Or see this region's nucleotide sequence