Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2154 and HP15_2155 are separated by 11 nucleotides HP15_2155 and HP15_2156 are separated by 22 nucleotides HP15_2156 and HP15_2157 are separated by 223 nucleotides
HP15_2154: HP15_2154 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 2,259,347 to 2,260,978
_2154
HP15_2155: HP15_2155 - triosephosphate isomerase, at 2,260,990 to 2,261,796
_2155
HP15_2156: HP15_2156 - phosphopyruvate hydratase, at 2,261,819 to 2,263,060
_2156
HP15_2157: HP15_2157 - methyl-accepting chemotaxis protein, at 2,263,284 to 2,265,290
_2157
Position (kb)
2261
2262
2263
2264 Strain fitness (log2 ratio)
-2
-1
0
1 at 2260.851 kb on - strand at 2260.861 kb on - strand at 2260.895 kb on + strand at 2261.111 kb on + strand, within HP15_2155 at 2261.113 kb on + strand, within HP15_2155 at 2261.121 kb on + strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.403 kb on - strand, within HP15_2155 at 2261.435 kb on - strand, within HP15_2155 at 2261.473 kb on - strand, within HP15_2155 at 2261.520 kb on - strand, within HP15_2155 at 2261.591 kb on - strand, within HP15_2155 at 2261.663 kb on - strand, within HP15_2155 at 2261.909 kb on - strand at 2261.920 kb on + strand at 2262.061 kb on + strand, within HP15_2156 at 2262.069 kb on - strand, within HP15_2156 at 2262.096 kb on + strand, within HP15_2156 at 2262.251 kb on - strand, within HP15_2156 at 2262.539 kb on + strand, within HP15_2156 at 2262.564 kb on + strand, within HP15_2156 at 2262.582 kb on + strand, within HP15_2156 at 2262.715 kb on + strand, within HP15_2156 at 2262.941 kb on - strand at 2263.121 kb on + strand at 2263.458 kb on - strand at 2263.477 kb on - strand at 2263.510 kb on - strand, within HP15_2157 at 2263.552 kb on + strand, within HP15_2157 at 2263.820 kb on - strand, within HP15_2157 at 2263.822 kb on + strand, within HP15_2157 at 2263.842 kb on + strand, within HP15_2157 at 2263.855 kb on - strand, within HP15_2157 at 2263.908 kb on + strand, within HP15_2157 at 2263.921 kb on + strand, within HP15_2157
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 2,260,851 - -0.2 2,260,861 - -0.3 2,260,895 + +0.9 2,261,111 + HP15_2155 0.15 -0.6 2,261,113 + HP15_2155 0.15 +1.0 2,261,121 + HP15_2155 0.16 -2.0 2,261,147 - HP15_2155 0.19 +1.3 2,261,147 - HP15_2155 0.19 -0.2 2,261,403 - HP15_2155 0.51 -0.9 2,261,435 - HP15_2155 0.55 -0.6 2,261,473 - HP15_2155 0.60 +1.5 2,261,520 - HP15_2155 0.66 +0.2 2,261,591 - HP15_2155 0.74 -0.6 2,261,663 - HP15_2155 0.83 +1.2 2,261,909 - +0.9 2,261,920 + -0.7 2,262,061 + HP15_2156 0.19 +0.8 2,262,069 - HP15_2156 0.20 -0.4 2,262,096 + HP15_2156 0.22 +0.5 2,262,251 - HP15_2156 0.35 +0.7 2,262,539 + HP15_2156 0.58 -0.5 2,262,564 + HP15_2156 0.60 +0.5 2,262,582 + HP15_2156 0.61 +0.6 2,262,715 + HP15_2156 0.72 -0.2 2,262,941 - -0.2 2,263,121 + -0.8 2,263,458 - +1.1 2,263,477 - -0.8 2,263,510 - HP15_2157 0.11 +1.1 2,263,552 + HP15_2157 0.13 -0.5 2,263,820 - HP15_2157 0.27 +0.8 2,263,822 + HP15_2157 0.27 +0.5 2,263,842 + HP15_2157 0.28 -0.1 2,263,855 - HP15_2157 0.28 +0.9 2,263,908 + HP15_2157 0.31 +0.8 2,263,921 + HP15_2157 0.32 +1.1
Or see this region's nucleotide sequence