Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1598 and HP15_1599 are separated by 26 nucleotides HP15_1599 and HP15_1600 are separated by 123 nucleotides HP15_1600 and HP15_1601 are separated by 8 nucleotides
HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633
_1598
HP15_1599: HP15_1599 - alkylglycerone-phosphate synthase, at 1,695,660 to 1,697,264
_1599
HP15_1600: HP15_1600 - transglutaminase-like cysteine peptidase-like protein, at 1,697,388 to 1,698,050
_1600
HP15_1601: HP15_1601 - general secretion pathway protein C-like protein, at 1,698,059 to 1,698,709
_1601
Position (kb)
1695
1696
1697
1698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1694.806 kb on + strand, within HP15_1598 at 1694.814 kb on - strand, within HP15_1598 at 1694.865 kb on + strand, within HP15_1598 at 1694.870 kb on + strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.901 kb on + strand, within HP15_1598 at 1694.903 kb on + strand, within HP15_1598 at 1694.904 kb on - strand, within HP15_1598 at 1694.911 kb on - strand, within HP15_1598 at 1695.028 kb on - strand, within HP15_1598 at 1695.272 kb on + strand, within HP15_1598 at 1695.284 kb on + strand, within HP15_1598 at 1695.292 kb on - strand, within HP15_1598 at 1695.356 kb on - strand, within HP15_1598 at 1695.616 kb on - strand at 1695.698 kb on + strand at 1695.706 kb on - strand at 1695.706 kb on - strand at 1695.714 kb on - strand at 1695.827 kb on + strand, within HP15_1599 at 1695.827 kb on + strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1696.008 kb on - strand, within HP15_1599 at 1696.032 kb on + strand, within HP15_1599 at 1696.061 kb on + strand, within HP15_1599 at 1696.066 kb on + strand, within HP15_1599 at 1696.180 kb on + strand, within HP15_1599 at 1696.188 kb on - strand, within HP15_1599 at 1696.251 kb on + strand, within HP15_1599 at 1696.363 kb on - strand, within HP15_1599 at 1696.399 kb on - strand, within HP15_1599 at 1696.447 kb on - strand, within HP15_1599 at 1696.461 kb on - strand, within HP15_1599 at 1696.504 kb on - strand, within HP15_1599 at 1696.536 kb on + strand, within HP15_1599 at 1696.544 kb on - strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.682 kb on - strand, within HP15_1599 at 1696.747 kb on - strand, within HP15_1599 at 1696.784 kb on + strand, within HP15_1599 at 1696.886 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.941 kb on - strand, within HP15_1599 at 1696.941 kb on - strand, within HP15_1599 at 1697.021 kb on - strand, within HP15_1599 at 1697.073 kb on + strand, within HP15_1599 at 1697.099 kb on - strand, within HP15_1599 at 1697.199 kb on + strand at 1697.199 kb on + strand at 1697.397 kb on + strand at 1697.423 kb on + strand at 1697.423 kb on + strand at 1697.433 kb on + strand at 1697.628 kb on - strand, within HP15_1600 at 1697.644 kb on - strand, within HP15_1600 at 1697.659 kb on + strand, within HP15_1600 at 1697.697 kb on + strand, within HP15_1600 at 1697.853 kb on + strand, within HP15_1600 at 1698.081 kb on + strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.091 kb on + strand at 1698.099 kb on - strand at 1698.122 kb on - strand at 1698.182 kb on - strand, within HP15_1601 at 1698.195 kb on + strand, within HP15_1601 at 1698.260 kb on - strand, within HP15_1601
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,694,806 + HP15_1598 0.48 -0.9 1,694,814 - HP15_1598 0.49 +1.2 1,694,865 + HP15_1598 0.52 +0.9 1,694,870 + HP15_1598 0.52 +0.7 1,694,873 - HP15_1598 0.52 +0.7 1,694,873 - HP15_1598 0.52 -0.4 1,694,901 + HP15_1598 0.54 -1.1 1,694,903 + HP15_1598 0.54 +0.1 1,694,904 - HP15_1598 0.54 +0.4 1,694,911 - HP15_1598 0.55 -0.1 1,695,028 - HP15_1598 0.62 +0.1 1,695,272 + HP15_1598 0.77 -0.9 1,695,284 + HP15_1598 0.78 -0.7 1,695,292 - HP15_1598 0.79 -0.3 1,695,356 - HP15_1598 0.83 -0.3 1,695,616 - +1.3 1,695,698 + -0.3 1,695,706 - +1.0 1,695,706 - -0.5 1,695,714 - +0.6 1,695,827 + HP15_1599 0.10 -0.0 1,695,827 + HP15_1599 0.10 -0.2 1,695,835 - HP15_1599 0.11 +0.2 1,695,835 - HP15_1599 0.11 -0.1 1,696,008 - HP15_1599 0.22 +0.1 1,696,032 + HP15_1599 0.23 -0.6 1,696,061 + HP15_1599 0.25 +1.2 1,696,066 + HP15_1599 0.25 -0.0 1,696,180 + HP15_1599 0.32 -1.8 1,696,188 - HP15_1599 0.33 +0.9 1,696,251 + HP15_1599 0.37 +0.1 1,696,363 - HP15_1599 0.44 -0.2 1,696,399 - HP15_1599 0.46 +2.6 1,696,447 - HP15_1599 0.49 +1.6 1,696,461 - HP15_1599 0.50 +0.9 1,696,504 - HP15_1599 0.53 +0.3 1,696,536 + HP15_1599 0.55 -0.4 1,696,544 - HP15_1599 0.55 +1.2 1,696,571 + HP15_1599 0.57 +0.3 1,696,571 + HP15_1599 0.57 -0.5 1,696,571 + HP15_1599 0.57 -0.0 1,696,571 + HP15_1599 0.57 -0.3 1,696,571 + HP15_1599 0.57 +0.9 1,696,571 + HP15_1599 0.57 +1.3 1,696,571 + HP15_1599 0.57 +1.3 1,696,579 - HP15_1599 0.57 +1.3 1,696,579 - HP15_1599 0.57 +0.1 1,696,579 - HP15_1599 0.57 +2.1 1,696,682 - HP15_1599 0.64 +1.1 1,696,747 - HP15_1599 0.68 +0.1 1,696,784 + HP15_1599 0.70 -0.2 1,696,886 + HP15_1599 0.76 +1.2 1,696,933 + HP15_1599 0.79 +1.0 1,696,933 + HP15_1599 0.79 -0.2 1,696,933 + HP15_1599 0.79 -0.5 1,696,941 - HP15_1599 0.80 +1.4 1,696,941 - HP15_1599 0.80 -0.2 1,697,021 - HP15_1599 0.85 +1.0 1,697,073 + HP15_1599 0.88 +0.7 1,697,099 - HP15_1599 0.90 -0.3 1,697,199 + +0.9 1,697,199 + +0.7 1,697,397 + +0.0 1,697,423 + +0.7 1,697,423 + -1.6 1,697,433 + +0.2 1,697,628 - HP15_1600 0.36 -1.4 1,697,644 - HP15_1600 0.39 -0.4 1,697,659 + HP15_1600 0.41 -0.2 1,697,697 + HP15_1600 0.47 +0.6 1,697,853 + HP15_1600 0.70 +1.0 1,698,081 + +0.4 1,698,089 - +1.5 1,698,089 - -0.4 1,698,091 + +1.0 1,698,099 - +1.4 1,698,122 - +0.2 1,698,182 - HP15_1601 0.19 -0.2 1,698,195 + HP15_1601 0.21 -0.8 1,698,260 - HP15_1601 0.31 +0.1
Or see this region's nucleotide sequence