Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1333 and HP15_1334 overlap by 1 nucleotides HP15_1334 and HP15_1335 are separated by 9 nucleotides HP15_1335 and HP15_1336 are separated by 116 nucleotides
HP15_1333: HP15_1333 - error-prone DNA polymerase, at 1,399,176 to 1,402,295
_1333
HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data) , at 1,402,295 to 1,403,713
_1334
HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412
_1335
HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888
_1336
Position (kb)
1402
1403
1404 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1401.314 kb on - strand, within HP15_1333 at 1401.362 kb on - strand, within HP15_1333 at 1401.466 kb on + strand, within HP15_1333 at 1401.514 kb on + strand, within HP15_1333 at 1401.522 kb on - strand, within HP15_1333 at 1401.806 kb on + strand, within HP15_1333 at 1401.819 kb on - strand, within HP15_1333 at 1401.951 kb on - strand, within HP15_1333 at 1401.965 kb on - strand, within HP15_1333 at 1402.171 kb on + strand at 1402.179 kb on - strand at 1402.194 kb on - strand at 1402.194 kb on - strand at 1402.194 kb on - strand at 1402.225 kb on + strand at 1402.279 kb on - strand at 1402.419 kb on + strand at 1402.549 kb on + strand, within HP15_1334 at 1402.596 kb on + strand, within HP15_1334 at 1402.606 kb on + strand, within HP15_1334 at 1402.614 kb on - strand, within HP15_1334 at 1402.654 kb on - strand, within HP15_1334 at 1402.968 kb on + strand, within HP15_1334 at 1402.978 kb on + strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.250 kb on + strand, within HP15_1334 at 1403.305 kb on - strand, within HP15_1334 at 1403.312 kb on + strand, within HP15_1334 at 1403.343 kb on - strand, within HP15_1334 at 1403.419 kb on - strand, within HP15_1334 at 1403.468 kb on + strand, within HP15_1334 at 1403.516 kb on - strand, within HP15_1334 at 1403.605 kb on - strand at 1403.755 kb on - strand at 1403.780 kb on - strand at 1403.917 kb on - strand, within HP15_1335 at 1403.919 kb on + strand, within HP15_1335 at 1403.932 kb on + strand, within HP15_1335 at 1403.949 kb on - strand, within HP15_1335 at 1403.974 kb on + strand, within HP15_1335 at 1404.095 kb on + strand, within HP15_1335 at 1404.105 kb on + strand, within HP15_1335 at 1404.108 kb on - strand, within HP15_1335 at 1404.136 kb on + strand, within HP15_1335 at 1404.278 kb on + strand, within HP15_1335 at 1404.361 kb on + strand at 1404.381 kb on + strand at 1404.403 kb on - strand at 1404.549 kb on + strand at 1404.564 kb on - strand at 1404.571 kb on - strand, within HP15_1336 at 1404.710 kb on + strand, within HP15_1336
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,401,314 - HP15_1333 0.69 -0.4 1,401,362 - HP15_1333 0.70 -2.0 1,401,466 + HP15_1333 0.73 +0.1 1,401,514 + HP15_1333 0.75 -0.2 1,401,522 - HP15_1333 0.75 +1.1 1,401,806 + HP15_1333 0.84 -0.3 1,401,819 - HP15_1333 0.85 -0.0 1,401,951 - HP15_1333 0.89 -0.4 1,401,965 - HP15_1333 0.89 +1.4 1,402,171 + +0.0 1,402,179 - +1.0 1,402,194 - -0.1 1,402,194 - -0.4 1,402,194 - +0.0 1,402,225 + -0.7 1,402,279 - +1.1 1,402,419 + -0.4 1,402,549 + HP15_1334 0.18 -0.2 1,402,596 + HP15_1334 0.21 -0.9 1,402,606 + HP15_1334 0.22 +0.6 1,402,614 - HP15_1334 0.22 -1.1 1,402,654 - HP15_1334 0.25 +1.2 1,402,968 + HP15_1334 0.47 +0.8 1,402,978 + HP15_1334 0.48 +1.2 1,403,179 - HP15_1334 0.62 -0.9 1,403,179 - HP15_1334 0.62 -0.7 1,403,250 + HP15_1334 0.67 -0.7 1,403,305 - HP15_1334 0.71 -0.5 1,403,312 + HP15_1334 0.72 -0.4 1,403,343 - HP15_1334 0.74 -0.6 1,403,419 - HP15_1334 0.79 +0.3 1,403,468 + HP15_1334 0.83 -0.1 1,403,516 - HP15_1334 0.86 -0.1 1,403,605 - +0.3 1,403,755 - -0.2 1,403,780 - +0.3 1,403,917 - HP15_1335 0.28 -0.0 1,403,919 + HP15_1335 0.28 +1.1 1,403,932 + HP15_1335 0.30 +1.9 1,403,949 - HP15_1335 0.33 -0.6 1,403,974 + HP15_1335 0.36 +1.0 1,404,095 + HP15_1335 0.54 -0.9 1,404,105 + HP15_1335 0.55 +0.7 1,404,108 - HP15_1335 0.56 -0.2 1,404,136 + HP15_1335 0.60 -0.1 1,404,278 + HP15_1335 0.80 +0.7 1,404,361 + +1.0 1,404,381 + -1.7 1,404,403 - -1.7 1,404,549 + +0.4 1,404,564 - -0.7 1,404,571 - HP15_1336 0.12 +1.1 1,404,710 + HP15_1336 0.50 +0.4
Or see this region's nucleotide sequence