Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1094 and HP15_1095 are separated by 704 nucleotides HP15_1095 and HP15_1096 are separated by 140 nucleotides HP15_1096 and HP15_1097 overlap by 4 nucleotides
HP15_1094: HP15_1094 - benzoate membrane transport protein, at 1,119,879 to 1,121,111
_1094
HP15_1095: HP15_1095 - porin, at 1,121,816 to 1,122,769
_1095
HP15_1096: HP15_1096 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,122,910 to 1,123,623
_1096
HP15_1097: HP15_1097 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,123,620 to 1,124,387
_1097
Position (kb)
1121
1122
1123 Strain fitness (log2 ratio)
-1
0
1
2 at 1120.843 kb on + strand, within HP15_1094 at 1120.846 kb on - strand, within HP15_1094 at 1120.855 kb on + strand, within HP15_1094 at 1120.863 kb on - strand, within HP15_1094 at 1120.863 kb on - strand, within HP15_1094 at 1120.863 kb on - strand, within HP15_1094 at 1120.958 kb on - strand, within HP15_1094 at 1120.967 kb on - strand, within HP15_1094 at 1120.980 kb on - strand, within HP15_1094 at 1121.070 kb on - strand at 1121.070 kb on - strand at 1121.070 kb on - strand at 1121.180 kb on - strand at 1121.285 kb on + strand at 1121.287 kb on + strand at 1121.359 kb on - strand at 1121.438 kb on + strand at 1121.438 kb on + strand at 1121.446 kb on - strand at 1121.446 kb on - strand at 1121.446 kb on - strand at 1121.446 kb on - strand at 1121.467 kb on + strand at 1121.494 kb on - strand at 1121.575 kb on - strand at 1121.595 kb on - strand at 1121.610 kb on - strand at 1121.611 kb on + strand at 1121.663 kb on - strand at 1121.803 kb on - strand at 1121.904 kb on - strand at 1122.077 kb on - strand, within HP15_1095 at 1122.141 kb on + strand, within HP15_1095 at 1122.168 kb on - strand, within HP15_1095 at 1122.168 kb on - strand, within HP15_1095 at 1122.251 kb on - strand, within HP15_1095 at 1122.298 kb on - strand, within HP15_1095 at 1122.371 kb on + strand, within HP15_1095 at 1122.379 kb on - strand, within HP15_1095 at 1122.397 kb on + strand, within HP15_1095 at 1122.436 kb on - strand, within HP15_1095 at 1122.453 kb on + strand, within HP15_1095 at 1122.453 kb on + strand, within HP15_1095 at 1122.453 kb on + strand, within HP15_1095 at 1122.453 kb on + strand, within HP15_1095 at 1122.461 kb on - strand, within HP15_1095 at 1122.461 kb on - strand, within HP15_1095 at 1122.461 kb on - strand, within HP15_1095 at 1122.476 kb on - strand, within HP15_1095 at 1122.551 kb on - strand, within HP15_1095 at 1122.551 kb on - strand, within HP15_1095 at 1122.586 kb on - strand, within HP15_1095 at 1122.586 kb on - strand, within HP15_1095 at 1122.769 kb on + strand at 1122.769 kb on + strand at 1123.123 kb on + strand, within HP15_1096 at 1123.173 kb on - strand, within HP15_1096 at 1123.224 kb on + strand, within HP15_1096 at 1123.258 kb on + strand, within HP15_1096 at 1123.485 kb on - strand, within HP15_1096 at 1123.492 kb on - strand, within HP15_1096 at 1123.492 kb on - strand, within HP15_1096 at 1123.497 kb on - strand, within HP15_1096 at 1123.586 kb on + strand at 1123.594 kb on - strand at 1123.594 kb on - strand at 1123.717 kb on + strand, within HP15_1097
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,120,843 + HP15_1094 0.78 -1.4 1,120,846 - HP15_1094 0.78 +1.3 1,120,855 + HP15_1094 0.79 +0.5 1,120,863 - HP15_1094 0.80 +0.1 1,120,863 - HP15_1094 0.80 +0.1 1,120,863 - HP15_1094 0.80 -0.2 1,120,958 - HP15_1094 0.88 -1.2 1,120,967 - HP15_1094 0.88 +0.1 1,120,980 - HP15_1094 0.89 +0.3 1,121,070 - -0.1 1,121,070 - +1.2 1,121,070 - -1.3 1,121,180 - -0.0 1,121,285 + -0.1 1,121,287 + +1.7 1,121,359 - +1.3 1,121,438 + -0.5 1,121,438 + -0.5 1,121,446 - +0.3 1,121,446 - +1.5 1,121,446 - +0.7 1,121,446 - +0.4 1,121,467 + +0.8 1,121,494 - -1.1 1,121,575 - +0.2 1,121,595 - -0.9 1,121,610 - -0.5 1,121,611 + -0.0 1,121,663 - -0.6 1,121,803 - +1.0 1,121,904 - +0.2 1,122,077 - HP15_1095 0.27 -0.1 1,122,141 + HP15_1095 0.34 -0.1 1,122,168 - HP15_1095 0.37 +0.1 1,122,168 - HP15_1095 0.37 +1.0 1,122,251 - HP15_1095 0.46 -1.1 1,122,298 - HP15_1095 0.51 +0.7 1,122,371 + HP15_1095 0.58 +1.4 1,122,379 - HP15_1095 0.59 +1.2 1,122,397 + HP15_1095 0.61 +1.3 1,122,436 - HP15_1095 0.65 +1.3 1,122,453 + HP15_1095 0.67 -0.3 1,122,453 + HP15_1095 0.67 +1.3 1,122,453 + HP15_1095 0.67 +0.7 1,122,453 + HP15_1095 0.67 +2.3 1,122,461 - HP15_1095 0.68 +0.7 1,122,461 - HP15_1095 0.68 +0.1 1,122,461 - HP15_1095 0.68 +1.1 1,122,476 - HP15_1095 0.69 +0.1 1,122,551 - HP15_1095 0.77 +1.4 1,122,551 - HP15_1095 0.77 +0.1 1,122,586 - HP15_1095 0.81 +0.5 1,122,586 - HP15_1095 0.81 -0.2 1,122,769 + -0.4 1,122,769 + +1.5 1,123,123 + HP15_1096 0.30 +1.1 1,123,173 - HP15_1096 0.37 +1.1 1,123,224 + HP15_1096 0.44 +0.4 1,123,258 + HP15_1096 0.49 -0.1 1,123,485 - HP15_1096 0.81 -0.8 1,123,492 - HP15_1096 0.82 -0.1 1,123,492 - HP15_1096 0.82 -0.4 1,123,497 - HP15_1096 0.82 +1.1 1,123,586 + -0.2 1,123,594 - +0.6 1,123,594 - +0.8 1,123,717 + HP15_1097 0.13 +0.7
Or see this region's nucleotide sequence