Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2903

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2902 and DvMF_2903 are separated by 268 nucleotidesDvMF_2903 and DvMF_2904 are separated by 196 nucleotides DvMF_2902: DvMF_2902 - delta-aminolevulinic acid dehydratase (RefSeq), at 3,662,489 to 3,663,490 _2902 DvMF_2903: DvMF_2903 - Radical SAM domain protein (RefSeq), at 3,663,759 to 3,664,940 _2903 DvMF_2904: DvMF_2904 - protein of unknown function DUF490 (RefSeq), at 3,665,137 to 3,670,950 _2904 Position (kb) 3663 3664 3665Strain fitness (log2 ratio) -1 0 1at 3663.664 kb on + strandat 3663.669 kb on + strandat 3665.252 kb on + strandat 3665.411 kb on - strandat 3665.450 kb on - strandat 3665.457 kb on + strandat 3665.457 kb on + strandat 3665.465 kb on - strandat 3665.575 kb on + strandat 3665.592 kb on + strandat 3665.866 kb on - strand, within DvMF_2904

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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3,663,664 + +1.3
3,663,669 + -0.1
3,665,252 + -0.2
3,665,411 - +0.3
3,665,450 - -0.5
3,665,457 + -0.0
3,665,457 + +0.3
3,665,465 - -0.5
3,665,575 + -0.5
3,665,592 + -0.7
3,665,866 - DvMF_2904 0.13 -0.2

Or see this region's nucleotide sequence