Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2708

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2707 and DvMF_2708 are separated by 151 nucleotidesDvMF_2708 and DvMF_2709 are separated by 98 nucleotides DvMF_2707: DvMF_2707 - putative PAS/PAC sensor protein (RefSeq), at 3,425,484 to 3,427,406 _2707 DvMF_2708: DvMF_2708 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 3,427,558 to 3,428,799 _2708 DvMF_2709: DvMF_2709 - nitroreductase (RefSeq), at 3,428,898 to 3,429,662 _2709 Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -2 -1 0 1at 3426.746 kb on + strand, within DvMF_2707at 3426.850 kb on - strand, within DvMF_2707at 3427.391 kb on + strandat 3427.714 kb on + strand, within DvMF_2708at 3427.898 kb on - strand, within DvMF_2708at 3428.003 kb on + strand, within DvMF_2708at 3428.011 kb on - strand, within DvMF_2708at 3428.045 kb on + strand, within DvMF_2708at 3428.230 kb on - strand, within DvMF_2708at 3428.391 kb on - strand, within DvMF_2708at 3428.391 kb on - strand, within DvMF_2708at 3428.447 kb on - strand, within DvMF_2708at 3428.452 kb on - strand, within DvMF_2708at 3428.528 kb on + strand, within DvMF_2708at 3428.606 kb on - strand, within DvMF_2708at 3428.748 kb on - strandat 3429.035 kb on - strand, within DvMF_2709at 3429.118 kb on - strand, within DvMF_2709at 3429.582 kb on - strand, within DvMF_2709at 3429.646 kb on + strandat 3429.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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3,426,746 + DvMF_2707 0.66 -2.3
3,426,850 - DvMF_2707 0.71 -1.9
3,427,391 + -0.6
3,427,714 + DvMF_2708 0.13 -0.8
3,427,898 - DvMF_2708 0.27 -1.5
3,428,003 + DvMF_2708 0.36 -1.1
3,428,011 - DvMF_2708 0.36 -1.9
3,428,045 + DvMF_2708 0.39 -0.7
3,428,230 - DvMF_2708 0.54 -0.4
3,428,391 - DvMF_2708 0.67 -1.0
3,428,391 - DvMF_2708 0.67 -1.0
3,428,447 - DvMF_2708 0.72 -1.2
3,428,452 - DvMF_2708 0.72 -1.6
3,428,528 + DvMF_2708 0.78 -0.0
3,428,606 - DvMF_2708 0.84 -0.3
3,428,748 - -0.3
3,429,035 - DvMF_2709 0.18 -0.1
3,429,118 - DvMF_2709 0.29 -0.1
3,429,582 - DvMF_2709 0.89 -0.2
3,429,646 + +0.9
3,429,736 - +0.2

Or see this region's nucleotide sequence