Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2286

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgB and DvMF_2285 overlap by 1 nucleotidesDvMF_2285 and DvMF_2286 are separated by 19 nucleotidesDvMF_2286 and DvMF_2287 are separated by 316 nucleotides DvMF_2284: flgB - flagellar basal body rod protein FlgB (RefSeq), at 2,873,035 to 2,873,445 flgB DvMF_2285: DvMF_2285 - flagellar basal-body rod protein FlgC (RefSeq), at 2,873,445 to 2,873,882 _2285 DvMF_2286: DvMF_2286 - flagellar hook-basal body complex subunit FliE (RefSeq), at 2,873,902 to 2,874,234 _2286 DvMF_2287: DvMF_2287 - flagellar M-ring protein FliF (RefSeq), at 2,874,551 to 2,876,170 _2287 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -1 0 1 2at 2873.064 kb on - strandat 2873.236 kb on + strand, within flgBat 2873.403 kb on + strand, within flgBat 2873.566 kb on - strand, within DvMF_2285at 2873.566 kb on - strand, within DvMF_2285at 2873.817 kb on - strand, within DvMF_2285at 2874.020 kb on - strand, within DvMF_2286at 2874.219 kb on - strandat 2874.503 kb on + strandat 2874.506 kb on - strandat 2874.508 kb on + strandat 2874.583 kb on + strandat 2874.643 kb on - strandat 2874.837 kb on + strand, within DvMF_2287at 2874.877 kb on - strand, within DvMF_2287at 2874.909 kb on - strand, within DvMF_2287at 2874.909 kb on - strand, within DvMF_2287at 2875.111 kb on - strand, within DvMF_2287at 2875.170 kb on + strand, within DvMF_2287at 2875.194 kb on + strand, within DvMF_2287at 2875.206 kb on - strand, within DvMF_2287

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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2,873,064 - +1.3
2,873,236 + flgB DvMF_2284 0.49 +1.3
2,873,403 + flgB DvMF_2284 0.90 +1.3
2,873,566 - DvMF_2285 0.28 +1.5
2,873,566 - DvMF_2285 0.28 +1.3
2,873,817 - DvMF_2285 0.85 +2.1
2,874,020 - DvMF_2286 0.35 +1.3
2,874,219 - +1.1
2,874,503 + -0.3
2,874,506 - -0.3
2,874,508 + -0.7
2,874,583 + +1.3
2,874,643 - +0.9
2,874,837 + DvMF_2287 0.18 +1.1
2,874,877 - DvMF_2287 0.20 +1.0
2,874,909 - DvMF_2287 0.22 +1.0
2,874,909 - DvMF_2287 0.22 +0.7
2,875,111 - DvMF_2287 0.35 +0.6
2,875,170 + DvMF_2287 0.38 +0.8
2,875,194 + DvMF_2287 0.40 +0.6
2,875,206 - DvMF_2287 0.40 +1.0

Or see this region's nucleotide sequence