Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2284

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2283 and flgB are separated by 659 nucleotidesflgB and DvMF_2285 overlap by 1 nucleotidesDvMF_2285 and DvMF_2286 are separated by 19 nucleotides DvMF_2283: DvMF_2283 - TPR repeat-containing protein (RefSeq), at 2,871,815 to 2,872,375 _2283 DvMF_2284: flgB - flagellar basal body rod protein FlgB (RefSeq), at 2,873,035 to 2,873,445 flgB DvMF_2285: DvMF_2285 - flagellar basal-body rod protein FlgC (RefSeq), at 2,873,445 to 2,873,882 _2285 DvMF_2286: DvMF_2286 - flagellar hook-basal body complex subunit FliE (RefSeq), at 2,873,902 to 2,874,234 _2286 Position (kb) 2873 2874Strain fitness (log2 ratio) -1 0 1 2at 2872.200 kb on + strand, within DvMF_2283at 2872.406 kb on + strandat 2872.495 kb on - strandat 2872.495 kb on - strandat 2872.559 kb on + strandat 2872.695 kb on + strandat 2872.709 kb on + strandat 2873.064 kb on - strandat 2873.236 kb on + strand, within flgBat 2873.403 kb on + strand, within flgBat 2873.566 kb on - strand, within DvMF_2285at 2873.566 kb on - strand, within DvMF_2285at 2873.817 kb on - strand, within DvMF_2285at 2874.020 kb on - strand, within DvMF_2286at 2874.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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2,872,200 + DvMF_2283 0.69 -0.1
2,872,406 + -0.2
2,872,495 - -1.1
2,872,495 - +0.1
2,872,559 + -0.9
2,872,695 + -0.5
2,872,709 + -0.5
2,873,064 - +1.3
2,873,236 + flgB DvMF_2284 0.49 +1.3
2,873,403 + flgB DvMF_2284 0.90 +1.3
2,873,566 - DvMF_2285 0.28 +1.5
2,873,566 - DvMF_2285 0.28 +1.3
2,873,817 - DvMF_2285 0.85 +2.1
2,874,020 - DvMF_2286 0.35 +1.3
2,874,219 - +1.1

Or see this region's nucleotide sequence