Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1798

Experiment: methionine 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1797 and DvMF_1798 are separated by 69 nucleotidesDvMF_1798 and DvMF_1799 are separated by 188 nucleotides DvMF_1797: DvMF_1797 - molybdenum cofactor synthesis domain protein (RefSeq), at 2,196,700 to 2,198,667 _1797 DvMF_1798: DvMF_1798 - sigma54 specific transcriptional acivator, PspF, Fis family (RefSeq), at 2,198,737 to 2,200,041 _1798 DvMF_1799: DvMF_1799 - phage shock protein A, PspA (RefSeq), at 2,200,230 to 2,200,961 _1799 Position (kb) 2198 2199 2200 2201Strain fitness (log2 ratio) -1 0 1at 2197.855 kb on - strand, within DvMF_1797at 2197.928 kb on - strand, within DvMF_1797at 2197.933 kb on + strand, within DvMF_1797at 2197.982 kb on - strand, within DvMF_1797at 2198.080 kb on + strand, within DvMF_1797at 2198.399 kb on + strand, within DvMF_1797at 2198.464 kb on + strand, within DvMF_1797at 2198.805 kb on - strandat 2198.839 kb on + strandat 2198.847 kb on - strandat 2198.847 kb on - strandat 2198.961 kb on + strand, within DvMF_1798at 2198.961 kb on + strand, within DvMF_1798at 2198.969 kb on - strand, within DvMF_1798at 2198.986 kb on + strand, within DvMF_1798at 2198.986 kb on + strand, within DvMF_1798at 2198.994 kb on - strand, within DvMF_1798at 2199.045 kb on + strand, within DvMF_1798at 2199.093 kb on + strand, within DvMF_1798at 2199.149 kb on + strand, within DvMF_1798at 2199.205 kb on - strand, within DvMF_1798at 2199.369 kb on - strand, within DvMF_1798at 2199.369 kb on - strand, within DvMF_1798at 2199.391 kb on - strand, within DvMF_1798at 2199.419 kb on - strand, within DvMF_1798at 2199.491 kb on - strand, within DvMF_1798at 2199.659 kb on + strand, within DvMF_1798at 2200.196 kb on + strandat 2200.292 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
remove
2,197,855 - DvMF_1797 0.59 -0.5
2,197,928 - DvMF_1797 0.62 -0.1
2,197,933 + DvMF_1797 0.63 -0.0
2,197,982 - DvMF_1797 0.65 -0.2
2,198,080 + DvMF_1797 0.70 -0.6
2,198,399 + DvMF_1797 0.86 -0.6
2,198,464 + DvMF_1797 0.90 -0.8
2,198,805 - -0.8
2,198,839 + -1.2
2,198,847 - -1.2
2,198,847 - -1.2
2,198,961 + DvMF_1798 0.17 -1.1
2,198,961 + DvMF_1798 0.17 -1.3
2,198,969 - DvMF_1798 0.18 -0.3
2,198,986 + DvMF_1798 0.19 -1.1
2,198,986 + DvMF_1798 0.19 +0.3
2,198,994 - DvMF_1798 0.20 -1.3
2,199,045 + DvMF_1798 0.24 -1.4
2,199,093 + DvMF_1798 0.27 -0.0
2,199,149 + DvMF_1798 0.32 -0.9
2,199,205 - DvMF_1798 0.36 -0.7
2,199,369 - DvMF_1798 0.48 -0.4
2,199,369 - DvMF_1798 0.48 -0.5
2,199,391 - DvMF_1798 0.50 -0.7
2,199,419 - DvMF_1798 0.52 -1.1
2,199,491 - DvMF_1798 0.58 -1.4
2,199,659 + DvMF_1798 0.71 -0.8
2,200,196 + -0.6
2,200,292 + -0.7

Or see this region's nucleotide sequence