Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1715

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1714 and DvMF_1715 are separated by 17 nucleotidesDvMF_1715 and DvMF_1716 are separated by 17 nucleotidesDvMF_1716 and argC are separated by 76 nucleotides DvMF_1714: DvMF_1714 - protein of unknown function Met10 (RefSeq), at 2,094,975 to 2,096,189 _1714 DvMF_1715: DvMF_1715 - aminotransferase class V (RefSeq), at 2,096,207 to 2,097,376 _1715 DvMF_1716: DvMF_1716 - Domain of unknown function DUF1844 (RefSeq), at 2,097,394 to 2,097,717 _1716 DvMF_1717: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 2,097,794 to 2,098,846 argC Position (kb) 2096 2097 2098Strain fitness (log2 ratio) -3 -2 -1 0 1at 2095.267 kb on - strand, within DvMF_1714at 2095.315 kb on - strand, within DvMF_1714at 2095.317 kb on + strand, within DvMF_1714at 2095.893 kb on - strand, within DvMF_1714at 2096.161 kb on - strandat 2097.931 kb on + strand, within argCat 2098.132 kb on + strand, within argCat 2098.143 kb on + strand, within argC

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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2,095,267 - DvMF_1714 0.24 -0.3
2,095,315 - DvMF_1714 0.28 -0.6
2,095,317 + DvMF_1714 0.28 -0.5
2,095,893 - DvMF_1714 0.76 -1.2
2,096,161 - -0.1
2,097,931 + argC DvMF_1717 0.13 -3.7
2,098,132 + argC DvMF_1717 0.32 -3.7
2,098,143 + argC DvMF_1717 0.33 -3.2

Or see this region's nucleotide sequence