Experiment: methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1391 and DvMF_1392 overlap by 4 nucleotides DvMF_1392 and DvMF_1393 are separated by 200 nucleotides DvMF_1393 and DvMF_1394 overlap by 44 nucleotides DvMF_1394 and truA are separated by 3 nucleotides
DvMF_1391: DvMF_1391 - protein of unknown function DUF62 (RefSeq), at 1,698,438 to 1,699,325
_1391
DvMF_1392: DvMF_1392 - cobalamin-5-phosphate synthase CobS (RefSeq), at 1,699,322 to 1,700,077
_1392
DvMF_1393: DvMF_1393 - flagellar export protein FliJ (RefSeq), at 1,700,278 to 1,700,718
_1393
DvMF_1394: DvMF_1394 - hypothetical protein (RefSeq), at 1,700,675 to 1,701,652
_1394
DvMF_1395: truA - tRNA pseudouridine synthase A (RefSeq), at 1,701,656 to 1,702,489
truA
Position (kb) 1700
1701 Strain fitness (log2 ratio) -1
0
1 at 1699.285 kb on - strand at 1699.359 kb on + strand at 1700.085 kb on - strand at 1700.348 kb on - strand, within DvMF_1393 at 1701.403 kb on + strand, within DvMF_1394 at 1701.430 kb on + strand, within DvMF_1394 at 1701.486 kb on - strand, within DvMF_1394 at 1701.575 kb on + strand at 1701.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methionine 1 mM remove 1,699,285 - +0.1 1,699,359 + -0.3 1,700,085 - -0.6 1,700,348 - DvMF_1393 0.16 +1.0 1,701,403 + DvMF_1394 0.74 +0.8 1,701,430 + DvMF_1394 0.77 +0.9 1,701,486 - DvMF_1394 0.83 +1.5 1,701,575 + +1.1 1,701,698 - -0.1
Or see this region's nucleotide sequence