Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1390

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1388 and DvMF_1389 are separated by 138 nucleotidesDvMF_1389 and DvMF_1390 are separated by 112 nucleotidesDvMF_1390 and DvMF_1391 are separated by 405 nucleotides DvMF_1388: DvMF_1388 - ATP synthase F0, A subunit (RefSeq), at 1,696,103 to 1,696,804 _1388 DvMF_1389: DvMF_1389 - ATP synthase F0, C subunit (RefSeq), at 1,696,943 to 1,697,272 _1389 DvMF_1390: DvMF_1390 - redox-sensing transcriptional repressor Rex (RefSeq), at 1,697,385 to 1,698,032 _1390 DvMF_1391: DvMF_1391 - protein of unknown function DUF62 (RefSeq), at 1,698,438 to 1,699,325 _1391 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -1 0 1at 1697.332 kb on + strandat 1698.108 kb on + strandat 1698.233 kb on - strandat 1698.337 kb on - strandat 1698.435 kb on + strandat 1698.524 kb on + strandat 1698.532 kb on + strand, within DvMF_1391at 1698.593 kb on + strand, within DvMF_1391at 1698.725 kb on - strand, within DvMF_1391at 1698.726 kb on + strand, within DvMF_1391at 1698.815 kb on - strand, within DvMF_1391at 1698.876 kb on - strand, within DvMF_1391at 1698.876 kb on - strand, within DvMF_1391

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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1,697,332 + -0.8
1,698,108 + -1.0
1,698,233 - +0.9
1,698,337 - -0.8
1,698,435 + -0.4
1,698,524 + -0.6
1,698,532 + DvMF_1391 0.11 -1.0
1,698,593 + DvMF_1391 0.17 +0.1
1,698,725 - DvMF_1391 0.32 -1.6
1,698,726 + DvMF_1391 0.32 -0.4
1,698,815 - DvMF_1391 0.42 -0.3
1,698,876 - DvMF_1391 0.49 -0.4
1,698,876 - DvMF_1391 0.49 -1.1

Or see this region's nucleotide sequence