Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1247

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1246 and DvMF_1247 are separated by 358 nucleotidesDvMF_1247 and DvMF_1248 overlap by 8 nucleotides DvMF_1246: DvMF_1246 - D-alanine--D-alanine ligase (RefSeq), at 1,539,988 to 1,541,214 _1246 DvMF_1247: DvMF_1247 - alpha/beta hydrolase fold protein (RefSeq), at 1,541,573 to 1,542,517 _1247 DvMF_1248: DvMF_1248 - Mur ligase middle domain protein (RefSeq), at 1,542,510 to 1,544,150 _1248 Position (kb) 1541 1542 1543Strain fitness (log2 ratio) -1 0 1at 1541.329 kb on + strandat 1541.330 kb on - strandat 1541.346 kb on + strandat 1541.369 kb on - strandat 1541.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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1,541,329 + -0.4
1,541,330 - -0.8
1,541,346 + +0.1
1,541,369 - +0.4
1,541,390 + -0.5

Or see this region's nucleotide sequence