Experiment: methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0904 and DvMF_0905 are separated by 292 nucleotides DvMF_0905 and DvMF_0906 are separated by 276 nucleotides DvMF_0906 and DvMF_0907 are separated by 223 nucleotides
DvMF_0904: DvMF_0904 - 2'-5' RNA ligase (RefSeq), at 1,088,007 to 1,088,822
_0904
DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660
_0905
DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380
_0906
DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962
_0907
Position (kb)
1089
1090 Strain fitness (log2 ratio)
-1
0
1 at 1088.126 kb on + strand, within DvMF_0904 at 1088.416 kb on + strand, within DvMF_0904 at 1088.424 kb on - strand, within DvMF_0904 at 1088.480 kb on - strand, within DvMF_0904 at 1088.485 kb on - strand, within DvMF_0904 at 1088.520 kb on - strand, within DvMF_0904 at 1088.545 kb on + strand, within DvMF_0904 at 1088.726 kb on + strand, within DvMF_0904 at 1088.792 kb on - strand at 1088.911 kb on - strand at 1089.001 kb on - strand at 1089.027 kb on - strand at 1089.593 kb on + strand, within DvMF_0905 at 1090.299 kb on - strand, within DvMF_0906 at 1090.299 kb on - strand, within DvMF_0906 at 1090.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methionine 1 mM remove 1,088,126 + DvMF_0904 0.15 -0.3 1,088,416 + DvMF_0904 0.50 -0.3 1,088,424 - DvMF_0904 0.51 -0.7 1,088,480 - DvMF_0904 0.58 -0.5 1,088,485 - DvMF_0904 0.59 +0.3 1,088,520 - DvMF_0904 0.63 -1.0 1,088,545 + DvMF_0904 0.66 -0.1 1,088,726 + DvMF_0904 0.88 -0.5 1,088,792 - +0.1 1,088,911 - -0.2 1,089,001 - +0.3 1,089,027 - +0.4 1,089,593 + DvMF_0905 0.88 +0.9 1,090,299 - DvMF_0906 0.82 -0.1 1,090,299 - DvMF_0906 0.82 -0.7 1,090,397 + -0.5
Or see this region's nucleotide sequence