Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3924

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3923 and Shewana3_3924 are separated by 627 nucleotidesShewana3_3924 and Shewana3_3925 are separated by 99 nucleotides Shewana3_3923: Shewana3_3923 - TonB-dependent receptor (RefSeq), at 4,713,715 to 4,715,772 _3923 Shewana3_3924: Shewana3_3924 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,716,400 to 4,717,983 _3924 Shewana3_3925: Shewana3_3925 - bile acid:sodium symporter (RefSeq), at 4,718,083 to 4,719,012 _3925 Position (kb) 4716 4717 4718Strain fitness (log2 ratio) -3 -2 -1 0 1at 4715.444 kb on - strand, within Shewana3_3923at 4715.536 kb on - strand, within Shewana3_3923at 4715.681 kb on - strandat 4715.689 kb on + strandat 4715.697 kb on - strandat 4715.961 kb on - strandat 4715.998 kb on + strandat 4716.066 kb on + strandat 4716.130 kb on + strandat 4716.130 kb on + strandat 4716.310 kb on + strandat 4716.604 kb on + strand, within Shewana3_3924at 4716.612 kb on - strand, within Shewana3_3924at 4716.612 kb on - strand, within Shewana3_3924at 4716.760 kb on + strand, within Shewana3_3924at 4716.791 kb on + strand, within Shewana3_3924at 4716.868 kb on + strand, within Shewana3_3924at 4716.997 kb on - strand, within Shewana3_3924at 4717.214 kb on - strand, within Shewana3_3924at 4717.273 kb on + strand, within Shewana3_3924at 4717.299 kb on - strand, within Shewana3_3924at 4717.328 kb on + strand, within Shewana3_3924at 4717.429 kb on + strand, within Shewana3_3924at 4717.486 kb on - strand, within Shewana3_3924at 4717.558 kb on + strand, within Shewana3_3924at 4717.614 kb on + strand, within Shewana3_3924at 4717.666 kb on + strand, within Shewana3_3924at 4717.822 kb on + strand, within Shewana3_3924at 4717.857 kb on + strandat 4717.865 kb on - strandat 4717.898 kb on + strandat 4718.033 kb on - strandat 4718.162 kb on - strandat 4718.240 kb on - strand, within Shewana3_3925at 4718.403 kb on + strand, within Shewana3_3925at 4718.411 kb on - strand, within Shewana3_3925at 4718.421 kb on + strand, within Shewana3_3925at 4718.702 kb on - strand, within Shewana3_3925at 4718.773 kb on + strand, within Shewana3_3925at 4718.865 kb on + strand, within Shewana3_3925at 4718.865 kb on + strand, within Shewana3_3925at 4718.865 kb on + strand, within Shewana3_3925at 4718.873 kb on - strand, within Shewana3_3925at 4718.873 kb on - strand, within Shewana3_3925at 4718.873 kb on - strand, within Shewana3_3925at 4718.873 kb on - strand, within Shewana3_3925at 4718.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,715,444 - Shewana3_3923 0.84 +0.3
4,715,536 - Shewana3_3923 0.88 +0.2
4,715,681 - +1.3
4,715,689 + -0.2
4,715,697 - -0.9
4,715,961 - -3.4
4,715,998 + -1.2
4,716,066 + +0.2
4,716,130 + +0.3
4,716,130 + -0.1
4,716,310 + +0.1
4,716,604 + Shewana3_3924 0.13 +0.5
4,716,612 - Shewana3_3924 0.13 -1.0
4,716,612 - Shewana3_3924 0.13 -1.0
4,716,760 + Shewana3_3924 0.23 +0.7
4,716,791 + Shewana3_3924 0.25 -0.0
4,716,868 + Shewana3_3924 0.30 -1.3
4,716,997 - Shewana3_3924 0.38 +0.3
4,717,214 - Shewana3_3924 0.51 +0.6
4,717,273 + Shewana3_3924 0.55 +0.4
4,717,299 - Shewana3_3924 0.57 -1.2
4,717,328 + Shewana3_3924 0.59 -0.0
4,717,429 + Shewana3_3924 0.65 +0.2
4,717,486 - Shewana3_3924 0.69 +1.0
4,717,558 + Shewana3_3924 0.73 -1.1
4,717,614 + Shewana3_3924 0.77 +0.4
4,717,666 + Shewana3_3924 0.80 -1.1
4,717,822 + Shewana3_3924 0.90 -0.7
4,717,857 + +0.2
4,717,865 - +0.5
4,717,898 + -0.7
4,718,033 - +0.2
4,718,162 - -2.3
4,718,240 - Shewana3_3925 0.17 +0.9
4,718,403 + Shewana3_3925 0.34 +0.5
4,718,411 - Shewana3_3925 0.35 +0.1
4,718,421 + Shewana3_3925 0.36 +0.5
4,718,702 - Shewana3_3925 0.67 +0.3
4,718,773 + Shewana3_3925 0.74 +0.7
4,718,865 + Shewana3_3925 0.84 -1.3
4,718,865 + Shewana3_3925 0.84 +0.4
4,718,865 + Shewana3_3925 0.84 -0.0
4,718,873 - Shewana3_3925 0.85 +0.3
4,718,873 - Shewana3_3925 0.85 +0.3
4,718,873 - Shewana3_3925 0.85 -0.0
4,718,873 - Shewana3_3925 0.85 -0.6
4,718,974 - +0.7

Or see this region's nucleotide sequence