Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3763 and Shewana3_3764 are separated by 273 nucleotides Shewana3_3764 and Shewana3_3765 are separated by 215 nucleotides
Shewana3_3763: Shewana3_3763 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,523,799 to 4,525,622
_3763
Shewana3_3764: Shewana3_3764 - hypothetical protein (RefSeq), at 4,525,896 to 4,526,360
_3764
Shewana3_3765: Shewana3_3765 - transporter DMT superfamily protein (RefSeq), at 4,526,576 to 4,527,463
_3765
Position (kb)
4525
4526
4527 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4525.032 kb on + strand, within Shewana3_3763 at 4525.250 kb on + strand, within Shewana3_3763 at 4525.304 kb on + strand, within Shewana3_3763 at 4525.304 kb on + strand, within Shewana3_3763 at 4525.304 kb on + strand, within Shewana3_3763 at 4525.306 kb on + strand, within Shewana3_3763 at 4525.312 kb on - strand, within Shewana3_3763 at 4525.441 kb on + strand at 4525.497 kb on + strand at 4525.497 kb on + strand at 4525.497 kb on + strand at 4525.505 kb on - strand at 4525.505 kb on - strand at 4525.576 kb on - strand at 4525.576 kb on - strand at 4525.647 kb on - strand at 4525.677 kb on + strand at 4525.849 kb on + strand at 4525.859 kb on + strand at 4525.869 kb on + strand at 4526.102 kb on + strand, within Shewana3_3764 at 4526.130 kb on - strand, within Shewana3_3764 at 4526.140 kb on + strand, within Shewana3_3764 at 4526.255 kb on - strand, within Shewana3_3764 at 4526.300 kb on + strand, within Shewana3_3764 at 4526.515 kb on + strand at 4526.628 kb on + strand at 4526.726 kb on - strand, within Shewana3_3765 at 4526.883 kb on + strand, within Shewana3_3765 at 4527.026 kb on - strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.172 kb on - strand, within Shewana3_3765 at 4527.332 kb on + strand, within Shewana3_3765 at 4527.340 kb on - strand, within Shewana3_3765
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,525,032 + Shewana3_3763 0.68 -0.6 4,525,250 + Shewana3_3763 0.80 -2.0 4,525,304 + Shewana3_3763 0.83 -1.1 4,525,304 + Shewana3_3763 0.83 +0.3 4,525,304 + Shewana3_3763 0.83 +1.1 4,525,306 + Shewana3_3763 0.83 +0.6 4,525,312 - Shewana3_3763 0.83 -1.5 4,525,441 + +0.2 4,525,497 + -0.1 4,525,497 + +0.2 4,525,497 + -0.2 4,525,505 - -0.1 4,525,505 - -0.3 4,525,576 - +0.9 4,525,576 - +0.4 4,525,647 - -0.8 4,525,677 + +0.5 4,525,849 + +0.6 4,525,859 + -0.8 4,525,869 + +0.3 4,526,102 + Shewana3_3764 0.44 +0.3 4,526,130 - Shewana3_3764 0.50 -0.5 4,526,140 + Shewana3_3764 0.52 +0.7 4,526,255 - Shewana3_3764 0.77 +0.6 4,526,300 + Shewana3_3764 0.87 +2.1 4,526,515 + +1.2 4,526,628 + +0.3 4,526,726 - Shewana3_3765 0.17 -1.1 4,526,883 + Shewana3_3765 0.35 -0.7 4,527,026 - Shewana3_3765 0.51 -1.0 4,527,164 + Shewana3_3765 0.66 +0.6 4,527,164 + Shewana3_3765 0.66 +0.8 4,527,164 + Shewana3_3765 0.66 -0.0 4,527,172 - Shewana3_3765 0.67 -0.2 4,527,332 + Shewana3_3765 0.85 +0.5 4,527,340 - Shewana3_3765 0.86 -0.4
Or see this region's nucleotide sequence