Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3764

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3763 and Shewana3_3764 are separated by 273 nucleotidesShewana3_3764 and Shewana3_3765 are separated by 215 nucleotides Shewana3_3763: Shewana3_3763 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,523,799 to 4,525,622 _3763 Shewana3_3764: Shewana3_3764 - hypothetical protein (RefSeq), at 4,525,896 to 4,526,360 _3764 Shewana3_3765: Shewana3_3765 - transporter DMT superfamily protein (RefSeq), at 4,526,576 to 4,527,463 _3765 Position (kb) 4525 4526 4527Strain fitness (log2 ratio) -2 -1 0 1 2at 4525.032 kb on + strand, within Shewana3_3763at 4525.250 kb on + strand, within Shewana3_3763at 4525.304 kb on + strand, within Shewana3_3763at 4525.304 kb on + strand, within Shewana3_3763at 4525.304 kb on + strand, within Shewana3_3763at 4525.306 kb on + strand, within Shewana3_3763at 4525.312 kb on - strand, within Shewana3_3763at 4525.441 kb on + strandat 4525.497 kb on + strandat 4525.497 kb on + strandat 4525.497 kb on + strandat 4525.505 kb on - strandat 4525.505 kb on - strandat 4525.576 kb on - strandat 4525.576 kb on - strandat 4525.647 kb on - strandat 4525.677 kb on + strandat 4525.849 kb on + strandat 4525.859 kb on + strandat 4525.869 kb on + strandat 4526.102 kb on + strand, within Shewana3_3764at 4526.130 kb on - strand, within Shewana3_3764at 4526.140 kb on + strand, within Shewana3_3764at 4526.255 kb on - strand, within Shewana3_3764at 4526.300 kb on + strand, within Shewana3_3764at 4526.515 kb on + strandat 4526.628 kb on + strandat 4526.726 kb on - strand, within Shewana3_3765at 4526.883 kb on + strand, within Shewana3_3765at 4527.026 kb on - strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.172 kb on - strand, within Shewana3_3765at 4527.332 kb on + strand, within Shewana3_3765at 4527.340 kb on - strand, within Shewana3_3765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,525,032 + Shewana3_3763 0.68 -0.6
4,525,250 + Shewana3_3763 0.80 -2.0
4,525,304 + Shewana3_3763 0.83 -1.1
4,525,304 + Shewana3_3763 0.83 +0.3
4,525,304 + Shewana3_3763 0.83 +1.1
4,525,306 + Shewana3_3763 0.83 +0.6
4,525,312 - Shewana3_3763 0.83 -1.5
4,525,441 + +0.2
4,525,497 + -0.1
4,525,497 + +0.2
4,525,497 + -0.2
4,525,505 - -0.1
4,525,505 - -0.3
4,525,576 - +0.9
4,525,576 - +0.4
4,525,647 - -0.8
4,525,677 + +0.5
4,525,849 + +0.6
4,525,859 + -0.8
4,525,869 + +0.3
4,526,102 + Shewana3_3764 0.44 +0.3
4,526,130 - Shewana3_3764 0.50 -0.5
4,526,140 + Shewana3_3764 0.52 +0.7
4,526,255 - Shewana3_3764 0.77 +0.6
4,526,300 + Shewana3_3764 0.87 +2.1
4,526,515 + +1.2
4,526,628 + +0.3
4,526,726 - Shewana3_3765 0.17 -1.1
4,526,883 + Shewana3_3765 0.35 -0.7
4,527,026 - Shewana3_3765 0.51 -1.0
4,527,164 + Shewana3_3765 0.66 +0.6
4,527,164 + Shewana3_3765 0.66 +0.8
4,527,164 + Shewana3_3765 0.66 -0.0
4,527,172 - Shewana3_3765 0.67 -0.2
4,527,332 + Shewana3_3765 0.85 +0.5
4,527,340 - Shewana3_3765 0.86 -0.4

Or see this region's nucleotide sequence