Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3759 and Shewana3_3760 overlap by 1 nucleotides Shewana3_3760 and Shewana3_3761 are separated by 51 nucleotides
Shewana3_3759: Shewana3_3759 - isopropylmalate isomerase large subunit (RefSeq), at 4,517,404 to 4,518,828
_3759
Shewana3_3760: Shewana3_3760 - 3-isopropylmalate dehydrogenase (RefSeq), at 4,518,828 to 4,519,922
_3760
Shewana3_3761: Shewana3_3761 - 2-isopropylmalate synthase (RefSeq), at 4,519,974 to 4,521,542
_3761
Position (kb)
4518
4519
4520 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 4517.914 kb on + strand, within Shewana3_3759 at 4518.072 kb on - strand, within Shewana3_3759 at 4518.160 kb on - strand, within Shewana3_3759 at 4518.259 kb on + strand, within Shewana3_3759 at 4518.551 kb on + strand, within Shewana3_3759 at 4518.551 kb on + strand, within Shewana3_3759 at 4518.559 kb on - strand, within Shewana3_3759 at 4518.591 kb on + strand, within Shewana3_3759 at 4518.599 kb on - strand, within Shewana3_3759 at 4518.599 kb on - strand, within Shewana3_3759 at 4518.621 kb on - strand, within Shewana3_3759 at 4518.755 kb on - strand at 4519.118 kb on - strand, within Shewana3_3760 at 4519.187 kb on + strand, within Shewana3_3760 at 4519.199 kb on + strand, within Shewana3_3760 at 4519.329 kb on + strand, within Shewana3_3760 at 4519.455 kb on + strand, within Shewana3_3760 at 4519.468 kb on - strand, within Shewana3_3760 at 4519.477 kb on + strand, within Shewana3_3760 at 4519.485 kb on - strand, within Shewana3_3760 at 4519.485 kb on - strand, within Shewana3_3760 at 4519.486 kb on - strand, within Shewana3_3760 at 4519.608 kb on - strand, within Shewana3_3760 at 4519.609 kb on + strand, within Shewana3_3760 at 4519.762 kb on + strand, within Shewana3_3760 at 4519.874 kb on + strand at 4519.888 kb on - strand at 4519.983 kb on + strand at 4520.081 kb on - strand at 4520.184 kb on - strand, within Shewana3_3761 at 4520.457 kb on + strand, within Shewana3_3761 at 4520.589 kb on + strand, within Shewana3_3761 at 4520.660 kb on + strand, within Shewana3_3761 at 4520.660 kb on + strand, within Shewana3_3761 at 4520.668 kb on - strand, within Shewana3_3761 at 4520.751 kb on - strand, within Shewana3_3761 at 4520.843 kb on + strand, within Shewana3_3761 at 4520.919 kb on + strand, within Shewana3_3761
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,517,914 + Shewana3_3759 0.36 -5.7 4,518,072 - Shewana3_3759 0.47 -5.3 4,518,160 - Shewana3_3759 0.53 -5.6 4,518,259 + Shewana3_3759 0.60 -4.9 4,518,551 + Shewana3_3759 0.80 -4.8 4,518,551 + Shewana3_3759 0.80 -5.4 4,518,559 - Shewana3_3759 0.81 -4.1 4,518,591 + Shewana3_3759 0.83 -5.0 4,518,599 - Shewana3_3759 0.84 -5.8 4,518,599 - Shewana3_3759 0.84 -5.6 4,518,621 - Shewana3_3759 0.85 -7.1 4,518,755 - -4.3 4,519,118 - Shewana3_3760 0.26 -6.6 4,519,187 + Shewana3_3760 0.33 -3.8 4,519,199 + Shewana3_3760 0.34 -5.2 4,519,329 + Shewana3_3760 0.46 -7.8 4,519,455 + Shewana3_3760 0.57 -3.6 4,519,468 - Shewana3_3760 0.58 -4.1 4,519,477 + Shewana3_3760 0.59 -3.9 4,519,485 - Shewana3_3760 0.60 -4.2 4,519,485 - Shewana3_3760 0.60 -4.9 4,519,486 - Shewana3_3760 0.60 -4.7 4,519,608 - Shewana3_3760 0.71 -3.2 4,519,609 + Shewana3_3760 0.71 -4.6 4,519,762 + Shewana3_3760 0.85 -5.2 4,519,874 + -6.5 4,519,888 - -5.0 4,519,983 + -5.7 4,520,081 - -2.8 4,520,184 - Shewana3_3761 0.13 -4.0 4,520,457 + Shewana3_3761 0.31 -6.4 4,520,589 + Shewana3_3761 0.39 -5.6 4,520,660 + Shewana3_3761 0.44 -5.7 4,520,660 + Shewana3_3761 0.44 -4.3 4,520,668 - Shewana3_3761 0.44 -6.9 4,520,751 - Shewana3_3761 0.50 -3.3 4,520,843 + Shewana3_3761 0.55 -5.3 4,520,919 + Shewana3_3761 0.60 -5.3
Or see this region's nucleotide sequence