Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3620

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3619 and Shewana3_3620 are separated by 379 nucleotidesShewana3_3620 and Shewana3_3621 are separated by 405 nucleotidesShewana3_3621 and Shewana3_3622 overlap by 14 nucleotides Shewana3_3619: Shewana3_3619 - molybdopterin oxidoreductase (RefSeq), at 4,345,006 to 4,347,300 _3619 Shewana3_3620: Shewana3_3620 - pentapeptide repeat-containing protein (RefSeq), at 4,347,680 to 4,348,306 _3620 Shewana3_3621: Shewana3_3621 - hypothetical protein (RefSeq), at 4,348,712 to 4,349,023 _3621 Shewana3_3622: Shewana3_3622 - phosphoribosylaminoimidazole-succinocarboxamide synthase (RefSeq), at 4,349,010 to 4,350,113 _3622 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4346.718 kb on + strand, within Shewana3_3619at 4346.729 kb on + strand, within Shewana3_3619at 4346.865 kb on + strand, within Shewana3_3619at 4347.164 kb on + strandat 4347.170 kb on + strandat 4347.170 kb on + strandat 4347.246 kb on + strandat 4347.307 kb on + strandat 4347.507 kb on + strandat 4347.507 kb on + strandat 4347.705 kb on - strandat 4347.998 kb on + strand, within Shewana3_3620at 4348.022 kb on + strand, within Shewana3_3620at 4348.025 kb on - strand, within Shewana3_3620at 4348.087 kb on + strand, within Shewana3_3620at 4348.220 kb on - strand, within Shewana3_3620at 4348.715 kb on - strandat 4348.751 kb on + strand, within Shewana3_3621at 4348.996 kb on + strandat 4348.999 kb on - strandat 4349.016 kb on - strandat 4349.022 kb on - strandat 4349.076 kb on - strandat 4349.095 kb on - strandat 4349.154 kb on - strand, within Shewana3_3622

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,346,718 + Shewana3_3619 0.75 -0.1
4,346,729 + Shewana3_3619 0.75 -0.1
4,346,865 + Shewana3_3619 0.81 +0.4
4,347,164 + -0.5
4,347,170 + +0.2
4,347,170 + -0.0
4,347,246 + -0.3
4,347,307 + -1.1
4,347,507 + -0.2
4,347,507 + +0.2
4,347,705 - -2.2
4,347,998 + Shewana3_3620 0.51 -0.1
4,348,022 + Shewana3_3620 0.55 -1.1
4,348,025 - Shewana3_3620 0.55 +0.3
4,348,087 + Shewana3_3620 0.65 +0.5
4,348,220 - Shewana3_3620 0.86 +0.6
4,348,715 - -3.6
4,348,751 + Shewana3_3621 0.12 -1.5
4,348,996 + -1.6
4,348,999 - -4.6
4,349,016 - -2.7
4,349,022 - -3.7
4,349,076 - -6.0
4,349,095 - -1.7
4,349,154 - Shewana3_3622 0.13 -5.1

Or see this region's nucleotide sequence