Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3619 and Shewana3_3620 are separated by 379 nucleotides Shewana3_3620 and Shewana3_3621 are separated by 405 nucleotides Shewana3_3621 and Shewana3_3622 overlap by 14 nucleotides
Shewana3_3619: Shewana3_3619 - molybdopterin oxidoreductase (RefSeq), at 4,345,006 to 4,347,300
_3619
Shewana3_3620: Shewana3_3620 - pentapeptide repeat-containing protein (RefSeq), at 4,347,680 to 4,348,306
_3620
Shewana3_3621: Shewana3_3621 - hypothetical protein (RefSeq), at 4,348,712 to 4,349,023
_3621
Shewana3_3622: Shewana3_3622 - phosphoribosylaminoimidazole-succinocarboxamide synthase (RefSeq), at 4,349,010 to 4,350,113
_3622
Position (kb)
4347
4348
4349 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 4346.718 kb on + strand, within Shewana3_3619 at 4346.729 kb on + strand, within Shewana3_3619 at 4346.865 kb on + strand, within Shewana3_3619 at 4347.164 kb on + strand at 4347.170 kb on + strand at 4347.170 kb on + strand at 4347.246 kb on + strand at 4347.307 kb on + strand at 4347.507 kb on + strand at 4347.507 kb on + strand at 4347.705 kb on - strand at 4347.998 kb on + strand, within Shewana3_3620 at 4348.022 kb on + strand, within Shewana3_3620 at 4348.025 kb on - strand, within Shewana3_3620 at 4348.087 kb on + strand, within Shewana3_3620 at 4348.220 kb on - strand, within Shewana3_3620 at 4348.715 kb on - strand at 4348.751 kb on + strand, within Shewana3_3621 at 4348.996 kb on + strand at 4348.999 kb on - strand at 4349.016 kb on - strand at 4349.022 kb on - strand at 4349.076 kb on - strand at 4349.095 kb on - strand at 4349.154 kb on - strand, within Shewana3_3622
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,346,718 + Shewana3_3619 0.75 -0.1 4,346,729 + Shewana3_3619 0.75 -0.1 4,346,865 + Shewana3_3619 0.81 +0.4 4,347,164 + -0.5 4,347,170 + +0.2 4,347,170 + -0.0 4,347,246 + -0.3 4,347,307 + -1.1 4,347,507 + -0.2 4,347,507 + +0.2 4,347,705 - -2.2 4,347,998 + Shewana3_3620 0.51 -0.1 4,348,022 + Shewana3_3620 0.55 -1.1 4,348,025 - Shewana3_3620 0.55 +0.3 4,348,087 + Shewana3_3620 0.65 +0.5 4,348,220 - Shewana3_3620 0.86 +0.6 4,348,715 - -3.6 4,348,751 + Shewana3_3621 0.12 -1.5 4,348,996 + -1.6 4,348,999 - -4.6 4,349,016 - -2.7 4,349,022 - -3.7 4,349,076 - -6.0 4,349,095 - -1.7 4,349,154 - Shewana3_3622 0.13 -5.1
Or see this region's nucleotide sequence