Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3492

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3491 and Shewana3_3492 are separated by 177 nucleotidesShewana3_3492 and Shewana3_3493 are separated by 276 nucleotides Shewana3_3491: Shewana3_3491 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,186,284 to 4,187,948 _3491 Shewana3_3492: Shewana3_3492 - hypothetical protein (RefSeq), at 4,188,126 to 4,188,515 _3492 Shewana3_3493: Shewana3_3493 - hypothetical protein (RefSeq), at 4,188,792 to 4,189,037 _3493 Position (kb) 4188 4189Strain fitness (log2 ratio) -2 -1 0 1at 4187.138 kb on + strand, within Shewana3_3491at 4187.336 kb on - strand, within Shewana3_3491at 4187.537 kb on - strand, within Shewana3_3491at 4187.641 kb on - strand, within Shewana3_3491at 4187.661 kb on - strand, within Shewana3_3491at 4187.723 kb on - strand, within Shewana3_3491at 4187.823 kb on + strandat 4187.908 kb on + strandat 4187.916 kb on - strandat 4187.956 kb on + strandat 4188.035 kb on + strandat 4188.044 kb on - strandat 4188.171 kb on + strand, within Shewana3_3492at 4188.208 kb on - strand, within Shewana3_3492at 4188.221 kb on - strand, within Shewana3_3492at 4188.329 kb on + strand, within Shewana3_3492at 4188.433 kb on + strand, within Shewana3_3492at 4188.433 kb on + strand, within Shewana3_3492at 4188.456 kb on - strand, within Shewana3_3492at 4188.603 kb on - strandat 4188.614 kb on + strandat 4188.623 kb on - strandat 4188.727 kb on - strandat 4188.751 kb on + strandat 4188.990 kb on + strand, within Shewana3_3493at 4189.263 kb on - strandat 4189.265 kb on + strandat 4189.301 kb on + strandat 4189.314 kb on - strandat 4189.390 kb on + strandat 4189.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,187,138 + Shewana3_3491 0.51 +0.1
4,187,336 - Shewana3_3491 0.63 -1.6
4,187,537 - Shewana3_3491 0.75 +0.4
4,187,641 - Shewana3_3491 0.82 +0.6
4,187,661 - Shewana3_3491 0.83 +0.4
4,187,723 - Shewana3_3491 0.86 -0.3
4,187,823 + +0.4
4,187,908 + -0.2
4,187,916 - -1.0
4,187,956 + +0.4
4,188,035 + +0.6
4,188,044 - -0.1
4,188,171 + Shewana3_3492 0.12 +0.1
4,188,208 - Shewana3_3492 0.21 +0.7
4,188,221 - Shewana3_3492 0.24 +0.2
4,188,329 + Shewana3_3492 0.52 +0.7
4,188,433 + Shewana3_3492 0.79 -0.2
4,188,433 + Shewana3_3492 0.79 +0.3
4,188,456 - Shewana3_3492 0.85 +0.2
4,188,603 - +0.2
4,188,614 + -1.2
4,188,623 - +0.2
4,188,727 - +0.6
4,188,751 + +0.7
4,188,990 + Shewana3_3493 0.80 -2.1
4,189,263 - +0.4
4,189,265 + +0.2
4,189,301 + -1.3
4,189,314 - -1.2
4,189,390 + +0.4
4,189,390 + +0.3

Or see this region's nucleotide sequence