Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3307

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3305 and Shewana3_3306 overlap by 11 nucleotidesShewana3_3306 and Shewana3_3307 overlap by 4 nucleotidesShewana3_3307 and Shewana3_3308 are separated by 5 nucleotides Shewana3_3305: Shewana3_3305 - MltA-interacting MipA family protein (RefSeq), at 3,967,862 to 3,968,704 _3305 Shewana3_3306: Shewana3_3306 - hypothetical protein (RefSeq), at 3,968,694 to 3,969,113 _3306 Shewana3_3307: Shewana3_3307 - two component transcriptional regulator (RefSeq), at 3,969,110 to 3,969,832 _3307 Shewana3_3308: Shewana3_3308 - ATPase domain-containing protein (RefSeq), at 3,969,838 to 3,971,067 _3308 Position (kb) 3969 3970Strain fitness (log2 ratio) -2 -1 0 1at 3968.153 kb on - strand, within Shewana3_3305at 3968.153 kb on - strand, within Shewana3_3305at 3968.153 kb on - strand, within Shewana3_3305at 3968.198 kb on - strand, within Shewana3_3305at 3968.386 kb on + strand, within Shewana3_3305at 3968.430 kb on + strand, within Shewana3_3305at 3968.457 kb on + strand, within Shewana3_3305at 3968.478 kb on + strand, within Shewana3_3305at 3968.486 kb on - strand, within Shewana3_3305at 3968.819 kb on - strand, within Shewana3_3306at 3968.899 kb on + strand, within Shewana3_3306at 3968.899 kb on + strand, within Shewana3_3306at 3968.907 kb on - strand, within Shewana3_3306at 3969.039 kb on + strand, within Shewana3_3306at 3969.059 kb on + strand, within Shewana3_3306at 3969.135 kb on - strandat 3969.184 kb on + strand, within Shewana3_3307at 3969.413 kb on - strand, within Shewana3_3307at 3969.558 kb on + strand, within Shewana3_3307at 3969.566 kb on - strand, within Shewana3_3307at 3969.710 kb on - strand, within Shewana3_3307at 3969.769 kb on - strandat 3969.834 kb on - strandat 3970.091 kb on + strand, within Shewana3_3308at 3970.096 kb on - strand, within Shewana3_3308at 3970.096 kb on - strand, within Shewana3_3308at 3970.122 kb on + strand, within Shewana3_3308at 3970.184 kb on - strand, within Shewana3_3308at 3970.361 kb on - strand, within Shewana3_3308at 3970.378 kb on - strand, within Shewana3_3308at 3970.449 kb on - strand, within Shewana3_3308at 3970.679 kb on - strand, within Shewana3_3308

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,968,153 - Shewana3_3305 0.35 +0.5
3,968,153 - Shewana3_3305 0.35 -1.0
3,968,153 - Shewana3_3305 0.35 +1.4
3,968,198 - Shewana3_3305 0.40 +0.8
3,968,386 + Shewana3_3305 0.62 -0.9
3,968,430 + Shewana3_3305 0.67 +0.2
3,968,457 + Shewana3_3305 0.71 -2.2
3,968,478 + Shewana3_3305 0.73 +0.4
3,968,486 - Shewana3_3305 0.74 +0.4
3,968,819 - Shewana3_3306 0.30 -0.5
3,968,899 + Shewana3_3306 0.49 +0.6
3,968,899 + Shewana3_3306 0.49 +0.2
3,968,907 - Shewana3_3306 0.51 +0.6
3,969,039 + Shewana3_3306 0.82 -0.1
3,969,059 + Shewana3_3306 0.87 -0.3
3,969,135 - +0.5
3,969,184 + Shewana3_3307 0.10 +0.2
3,969,413 - Shewana3_3307 0.42 +1.2
3,969,558 + Shewana3_3307 0.62 +0.4
3,969,566 - Shewana3_3307 0.63 +0.4
3,969,710 - Shewana3_3307 0.83 -1.2
3,969,769 - +0.7
3,969,834 - -0.2
3,970,091 + Shewana3_3308 0.21 -1.1
3,970,096 - Shewana3_3308 0.21 +0.6
3,970,096 - Shewana3_3308 0.21 -0.2
3,970,122 + Shewana3_3308 0.23 -1.1
3,970,184 - Shewana3_3308 0.28 -0.2
3,970,361 - Shewana3_3308 0.43 +0.6
3,970,378 - Shewana3_3308 0.44 -1.3
3,970,449 - Shewana3_3308 0.50 -0.1
3,970,679 - Shewana3_3308 0.68 -0.8

Or see this region's nucleotide sequence