Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2916

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2915 and Shewana3_2916 overlap by 1 nucleotidesShewana3_2916 and Shewana3_2917 overlap by 1 nucleotidesShewana3_2917 and Shewana3_2918 overlap by 1 nucleotides Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653 _2915 Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322 _2916 Shewana3_2917: Shewana3_2917 - hypothetical protein (RefSeq), at 3,494,322 to 3,494,999 _2917 Shewana3_2918: Shewana3_2918 - hypothetical protein (RefSeq), at 3,494,999 to 3,495,436 _2918 Position (kb) 3491 3492 3493 3494 3495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3490.728 kb on + strand, within Shewana3_2915at 3490.881 kb on + strand, within Shewana3_2915at 3490.904 kb on + strand, within Shewana3_2915at 3491.067 kb on + strand, within Shewana3_2915at 3491.414 kb on - strandat 3491.470 kb on + strand, within Shewana3_2915at 3491.480 kb on + strand, within Shewana3_2915at 3491.611 kb on + strandat 3491.886 kb on + strandat 3491.894 kb on - strandat 3491.927 kb on - strand, within Shewana3_2916at 3491.927 kb on - strand, within Shewana3_2916at 3492.117 kb on - strand, within Shewana3_2916at 3492.126 kb on - strand, within Shewana3_2916at 3492.288 kb on + strand, within Shewana3_2916at 3492.426 kb on + strand, within Shewana3_2916at 3492.473 kb on + strand, within Shewana3_2916at 3492.738 kb on - strand, within Shewana3_2916at 3492.800 kb on + strand, within Shewana3_2916at 3493.005 kb on + strand, within Shewana3_2916at 3493.092 kb on - strand, within Shewana3_2916at 3493.388 kb on + strand, within Shewana3_2916at 3493.403 kb on + strand, within Shewana3_2916at 3493.411 kb on - strand, within Shewana3_2916at 3493.478 kb on + strand, within Shewana3_2916at 3493.486 kb on - strand, within Shewana3_2916at 3493.711 kb on + strand, within Shewana3_2916at 3493.860 kb on + strand, within Shewana3_2916at 3494.255 kb on + strandat 3494.467 kb on - strand, within Shewana3_2917at 3494.528 kb on + strand, within Shewana3_2917at 3494.530 kb on + strand, within Shewana3_2917at 3494.561 kb on + strand, within Shewana3_2917at 3494.561 kb on + strand, within Shewana3_2917at 3494.603 kb on + strand, within Shewana3_2917at 3494.611 kb on - strand, within Shewana3_2917at 3494.644 kb on + strand, within Shewana3_2917at 3494.686 kb on - strand, within Shewana3_2917at 3494.925 kb on + strand, within Shewana3_2917at 3495.197 kb on - strand, within Shewana3_2918at 3495.218 kb on - strand, within Shewana3_2918

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,490,728 + Shewana3_2915 0.37 +0.2
3,490,881 + Shewana3_2915 0.48 +0.2
3,490,904 + Shewana3_2915 0.49 -0.2
3,491,067 + Shewana3_2915 0.60 -0.3
3,491,414 - -1.3
3,491,470 + Shewana3_2915 0.88 +0.9
3,491,480 + Shewana3_2915 0.88 -1.0
3,491,611 + +0.7
3,491,886 + -0.0
3,491,894 - +1.4
3,491,927 - Shewana3_2916 0.10 +0.7
3,491,927 - Shewana3_2916 0.10 +0.1
3,492,117 - Shewana3_2916 0.17 +1.8
3,492,126 - Shewana3_2916 0.18 -0.2
3,492,288 + Shewana3_2916 0.24 -0.6
3,492,426 + Shewana3_2916 0.29 +0.6
3,492,473 + Shewana3_2916 0.31 -0.4
3,492,738 - Shewana3_2916 0.41 +0.5
3,492,800 + Shewana3_2916 0.43 +1.2
3,493,005 + Shewana3_2916 0.51 +1.3
3,493,092 - Shewana3_2916 0.54 -3.1
3,493,388 + Shewana3_2916 0.65 +0.4
3,493,403 + Shewana3_2916 0.66 +0.1
3,493,411 - Shewana3_2916 0.66 +1.1
3,493,478 + Shewana3_2916 0.68 -0.4
3,493,486 - Shewana3_2916 0.69 +0.7
3,493,711 + Shewana3_2916 0.77 +0.1
3,493,860 + Shewana3_2916 0.83 +0.2
3,494,255 + +0.2
3,494,467 - Shewana3_2917 0.21 +0.6
3,494,528 + Shewana3_2917 0.30 +1.3
3,494,530 + Shewana3_2917 0.31 -0.3
3,494,561 + Shewana3_2917 0.35 -1.3
3,494,561 + Shewana3_2917 0.35 -0.1
3,494,603 + Shewana3_2917 0.41 -0.8
3,494,611 - Shewana3_2917 0.43 -1.0
3,494,644 + Shewana3_2917 0.47 +0.7
3,494,686 - Shewana3_2917 0.54 -0.2
3,494,925 + Shewana3_2917 0.89 -0.3
3,495,197 - Shewana3_2918 0.45 +0.2
3,495,218 - Shewana3_2918 0.50 +1.0

Or see this region's nucleotide sequence