Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2915 and Shewana3_2916 overlap by 1 nucleotides Shewana3_2916 and Shewana3_2917 overlap by 1 nucleotides Shewana3_2917 and Shewana3_2918 overlap by 1 nucleotides
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322
_2916
Shewana3_2917: Shewana3_2917 - hypothetical protein (RefSeq), at 3,494,322 to 3,494,999
_2917
Shewana3_2918: Shewana3_2918 - hypothetical protein (RefSeq), at 3,494,999 to 3,495,436
_2918
Position (kb)
3491
3492
3493
3494
3495 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3490.728 kb on + strand, within Shewana3_2915 at 3490.881 kb on + strand, within Shewana3_2915 at 3490.904 kb on + strand, within Shewana3_2915 at 3491.067 kb on + strand, within Shewana3_2915 at 3491.414 kb on - strand at 3491.470 kb on + strand, within Shewana3_2915 at 3491.480 kb on + strand, within Shewana3_2915 at 3491.611 kb on + strand at 3491.886 kb on + strand at 3491.894 kb on - strand at 3491.927 kb on - strand, within Shewana3_2916 at 3491.927 kb on - strand, within Shewana3_2916 at 3492.117 kb on - strand, within Shewana3_2916 at 3492.126 kb on - strand, within Shewana3_2916 at 3492.288 kb on + strand, within Shewana3_2916 at 3492.426 kb on + strand, within Shewana3_2916 at 3492.473 kb on + strand, within Shewana3_2916 at 3492.738 kb on - strand, within Shewana3_2916 at 3492.800 kb on + strand, within Shewana3_2916 at 3493.005 kb on + strand, within Shewana3_2916 at 3493.092 kb on - strand, within Shewana3_2916 at 3493.388 kb on + strand, within Shewana3_2916 at 3493.403 kb on + strand, within Shewana3_2916 at 3493.411 kb on - strand, within Shewana3_2916 at 3493.478 kb on + strand, within Shewana3_2916 at 3493.486 kb on - strand, within Shewana3_2916 at 3493.711 kb on + strand, within Shewana3_2916 at 3493.860 kb on + strand, within Shewana3_2916 at 3494.255 kb on + strand at 3494.467 kb on - strand, within Shewana3_2917 at 3494.528 kb on + strand, within Shewana3_2917 at 3494.530 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.603 kb on + strand, within Shewana3_2917 at 3494.611 kb on - strand, within Shewana3_2917 at 3494.644 kb on + strand, within Shewana3_2917 at 3494.686 kb on - strand, within Shewana3_2917 at 3494.925 kb on + strand, within Shewana3_2917 at 3495.197 kb on - strand, within Shewana3_2918 at 3495.218 kb on - strand, within Shewana3_2918
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,490,728 + Shewana3_2915 0.37 +0.2 3,490,881 + Shewana3_2915 0.48 +0.2 3,490,904 + Shewana3_2915 0.49 -0.2 3,491,067 + Shewana3_2915 0.60 -0.3 3,491,414 - -1.3 3,491,470 + Shewana3_2915 0.88 +0.9 3,491,480 + Shewana3_2915 0.88 -1.0 3,491,611 + +0.7 3,491,886 + -0.0 3,491,894 - +1.4 3,491,927 - Shewana3_2916 0.10 +0.7 3,491,927 - Shewana3_2916 0.10 +0.1 3,492,117 - Shewana3_2916 0.17 +1.8 3,492,126 - Shewana3_2916 0.18 -0.2 3,492,288 + Shewana3_2916 0.24 -0.6 3,492,426 + Shewana3_2916 0.29 +0.6 3,492,473 + Shewana3_2916 0.31 -0.4 3,492,738 - Shewana3_2916 0.41 +0.5 3,492,800 + Shewana3_2916 0.43 +1.2 3,493,005 + Shewana3_2916 0.51 +1.3 3,493,092 - Shewana3_2916 0.54 -3.1 3,493,388 + Shewana3_2916 0.65 +0.4 3,493,403 + Shewana3_2916 0.66 +0.1 3,493,411 - Shewana3_2916 0.66 +1.1 3,493,478 + Shewana3_2916 0.68 -0.4 3,493,486 - Shewana3_2916 0.69 +0.7 3,493,711 + Shewana3_2916 0.77 +0.1 3,493,860 + Shewana3_2916 0.83 +0.2 3,494,255 + +0.2 3,494,467 - Shewana3_2917 0.21 +0.6 3,494,528 + Shewana3_2917 0.30 +1.3 3,494,530 + Shewana3_2917 0.31 -0.3 3,494,561 + Shewana3_2917 0.35 -1.3 3,494,561 + Shewana3_2917 0.35 -0.1 3,494,603 + Shewana3_2917 0.41 -0.8 3,494,611 - Shewana3_2917 0.43 -1.0 3,494,644 + Shewana3_2917 0.47 +0.7 3,494,686 - Shewana3_2917 0.54 -0.2 3,494,925 + Shewana3_2917 0.89 -0.3 3,495,197 - Shewana3_2918 0.45 +0.2 3,495,218 - Shewana3_2918 0.50 +1.0
Or see this region's nucleotide sequence