Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2898 and Shewana3_2899 are separated by 314 nucleotides Shewana3_2899 and Shewana3_2900 are separated by 2 nucleotides Shewana3_2900 and Shewana3_2901 are separated by 21 nucleotides
Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510
_2898
Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064
_2899
Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948
_2900
Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838
_2901
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3467.838 kb on - strand, within Shewana3_2898 at 3467.952 kb on - strand, within Shewana3_2898 at 3468.037 kb on + strand, within Shewana3_2898 at 3468.156 kb on - strand, within Shewana3_2898 at 3468.286 kb on + strand, within Shewana3_2898 at 3468.455 kb on + strand at 3468.463 kb on - strand at 3468.783 kb on + strand at 3468.786 kb on + strand at 3469.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,467,838 - Shewana3_2898 0.12 +1.3 3,467,952 - Shewana3_2898 0.27 +2.3 3,468,037 + Shewana3_2898 0.38 +2.2 3,468,156 - Shewana3_2898 0.54 +2.2 3,468,286 + Shewana3_2898 0.71 +1.4 3,468,455 + +4.6 3,468,463 - +1.9 3,468,783 + -0.7 3,468,786 + +0.4 3,469,055 + +0.4
Or see this region's nucleotide sequence