Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2786 and Shewana3_2787 are separated by 424 nucleotides Shewana3_2787 and Shewana3_2788 are separated by 112 nucleotides Shewana3_2788 and Shewana3_2789 are separated by 4 nucleotides
Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654
_2786
Shewana3_2787: Shewana3_2787 - decaheme cytochrome c (RefSeq), at 3,326,079 to 3,328,367
_2787
Shewana3_2788: Shewana3_2788 - hypothetical protein (RefSeq), at 3,328,480 to 3,329,154
_2788
Shewana3_2789: Shewana3_2789 - hypothetical protein (RefSeq), at 3,329,159 to 3,329,893
_2789
Position (kb)
3326
3327
3328
3329 Strain fitness (log2 ratio)
-2
-1
0
1 at 3325.263 kb on + strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.412 kb on + strand, within Shewana3_2786 at 3325.448 kb on + strand, within Shewana3_2786 at 3325.815 kb on + strand at 3326.027 kb on + strand at 3326.298 kb on - strand at 3326.580 kb on + strand, within Shewana3_2787 at 3326.659 kb on + strand, within Shewana3_2787 at 3326.712 kb on + strand, within Shewana3_2787 at 3326.757 kb on + strand, within Shewana3_2787 at 3326.853 kb on + strand, within Shewana3_2787 at 3327.233 kb on - strand, within Shewana3_2787 at 3327.451 kb on - strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.649 kb on - strand, within Shewana3_2787 at 3327.801 kb on + strand, within Shewana3_2787 at 3327.801 kb on + strand, within Shewana3_2787 at 3327.834 kb on + strand, within Shewana3_2787 at 3327.852 kb on + strand, within Shewana3_2787 at 3328.009 kb on - strand, within Shewana3_2787 at 3328.084 kb on + strand, within Shewana3_2787 at 3328.196 kb on + strand at 3328.598 kb on - strand, within Shewana3_2788 at 3328.833 kb on + strand, within Shewana3_2788 at 3328.963 kb on - strand, within Shewana3_2788 at 3328.975 kb on + strand, within Shewana3_2788 at 3328.983 kb on - strand, within Shewana3_2788 at 3329.019 kb on - strand, within Shewana3_2788 at 3329.067 kb on - strand, within Shewana3_2788 at 3329.116 kb on - strand at 3329.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,325,263 + Shewana3_2786 0.61 -0.1 3,325,271 - Shewana3_2786 0.62 -1.7 3,325,271 - Shewana3_2786 0.62 +1.4 3,325,412 + Shewana3_2786 0.76 +1.3 3,325,448 + Shewana3_2786 0.80 -1.0 3,325,815 + -0.3 3,326,027 + +0.5 3,326,298 - -0.8 3,326,580 + Shewana3_2787 0.22 +0.1 3,326,659 + Shewana3_2787 0.25 +0.4 3,326,712 + Shewana3_2787 0.28 -0.1 3,326,757 + Shewana3_2787 0.30 -0.8 3,326,853 + Shewana3_2787 0.34 +0.2 3,327,233 - Shewana3_2787 0.50 +0.9 3,327,451 - Shewana3_2787 0.60 +0.8 3,327,540 + Shewana3_2787 0.64 +0.2 3,327,540 + Shewana3_2787 0.64 +0.7 3,327,540 + Shewana3_2787 0.64 +0.1 3,327,649 - Shewana3_2787 0.69 -0.3 3,327,801 + Shewana3_2787 0.75 +0.5 3,327,801 + Shewana3_2787 0.75 +0.3 3,327,834 + Shewana3_2787 0.77 +0.3 3,327,852 + Shewana3_2787 0.77 -2.0 3,328,009 - Shewana3_2787 0.84 +0.4 3,328,084 + Shewana3_2787 0.88 +0.3 3,328,196 + +1.5 3,328,598 - Shewana3_2788 0.17 -0.6 3,328,833 + Shewana3_2788 0.52 +0.7 3,328,963 - Shewana3_2788 0.72 +0.1 3,328,975 + Shewana3_2788 0.73 +0.3 3,328,983 - Shewana3_2788 0.75 -0.1 3,329,019 - Shewana3_2788 0.80 +0.2 3,329,067 - Shewana3_2788 0.87 -0.0 3,329,116 - -2.0 3,329,167 + +0.6
Or see this region's nucleotide sequence