Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2787

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2786 and Shewana3_2787 are separated by 424 nucleotidesShewana3_2787 and Shewana3_2788 are separated by 112 nucleotidesShewana3_2788 and Shewana3_2789 are separated by 4 nucleotides Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654 _2786 Shewana3_2787: Shewana3_2787 - decaheme cytochrome c (RefSeq), at 3,326,079 to 3,328,367 _2787 Shewana3_2788: Shewana3_2788 - hypothetical protein (RefSeq), at 3,328,480 to 3,329,154 _2788 Shewana3_2789: Shewana3_2789 - hypothetical protein (RefSeq), at 3,329,159 to 3,329,893 _2789 Position (kb) 3326 3327 3328 3329Strain fitness (log2 ratio) -2 -1 0 1at 3325.263 kb on + strand, within Shewana3_2786at 3325.271 kb on - strand, within Shewana3_2786at 3325.271 kb on - strand, within Shewana3_2786at 3325.412 kb on + strand, within Shewana3_2786at 3325.448 kb on + strand, within Shewana3_2786at 3325.815 kb on + strandat 3326.027 kb on + strandat 3326.298 kb on - strandat 3326.580 kb on + strand, within Shewana3_2787at 3326.659 kb on + strand, within Shewana3_2787at 3326.712 kb on + strand, within Shewana3_2787at 3326.757 kb on + strand, within Shewana3_2787at 3326.853 kb on + strand, within Shewana3_2787at 3327.233 kb on - strand, within Shewana3_2787at 3327.451 kb on - strand, within Shewana3_2787at 3327.540 kb on + strand, within Shewana3_2787at 3327.540 kb on + strand, within Shewana3_2787at 3327.540 kb on + strand, within Shewana3_2787at 3327.649 kb on - strand, within Shewana3_2787at 3327.801 kb on + strand, within Shewana3_2787at 3327.801 kb on + strand, within Shewana3_2787at 3327.834 kb on + strand, within Shewana3_2787at 3327.852 kb on + strand, within Shewana3_2787at 3328.009 kb on - strand, within Shewana3_2787at 3328.084 kb on + strand, within Shewana3_2787at 3328.196 kb on + strandat 3328.598 kb on - strand, within Shewana3_2788at 3328.833 kb on + strand, within Shewana3_2788at 3328.963 kb on - strand, within Shewana3_2788at 3328.975 kb on + strand, within Shewana3_2788at 3328.983 kb on - strand, within Shewana3_2788at 3329.019 kb on - strand, within Shewana3_2788at 3329.067 kb on - strand, within Shewana3_2788at 3329.116 kb on - strandat 3329.167 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
3,325,263 + Shewana3_2786 0.61 -0.1
3,325,271 - Shewana3_2786 0.62 -1.7
3,325,271 - Shewana3_2786 0.62 +1.4
3,325,412 + Shewana3_2786 0.76 +1.3
3,325,448 + Shewana3_2786 0.80 -1.0
3,325,815 + -0.3
3,326,027 + +0.5
3,326,298 - -0.8
3,326,580 + Shewana3_2787 0.22 +0.1
3,326,659 + Shewana3_2787 0.25 +0.4
3,326,712 + Shewana3_2787 0.28 -0.1
3,326,757 + Shewana3_2787 0.30 -0.8
3,326,853 + Shewana3_2787 0.34 +0.2
3,327,233 - Shewana3_2787 0.50 +0.9
3,327,451 - Shewana3_2787 0.60 +0.8
3,327,540 + Shewana3_2787 0.64 +0.2
3,327,540 + Shewana3_2787 0.64 +0.7
3,327,540 + Shewana3_2787 0.64 +0.1
3,327,649 - Shewana3_2787 0.69 -0.3
3,327,801 + Shewana3_2787 0.75 +0.5
3,327,801 + Shewana3_2787 0.75 +0.3
3,327,834 + Shewana3_2787 0.77 +0.3
3,327,852 + Shewana3_2787 0.77 -2.0
3,328,009 - Shewana3_2787 0.84 +0.4
3,328,084 + Shewana3_2787 0.88 +0.3
3,328,196 + +1.5
3,328,598 - Shewana3_2788 0.17 -0.6
3,328,833 + Shewana3_2788 0.52 +0.7
3,328,963 - Shewana3_2788 0.72 +0.1
3,328,975 + Shewana3_2788 0.73 +0.3
3,328,983 - Shewana3_2788 0.75 -0.1
3,329,019 - Shewana3_2788 0.80 +0.2
3,329,067 - Shewana3_2788 0.87 -0.0
3,329,116 - -2.0
3,329,167 + +0.6

Or see this region's nucleotide sequence