Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2297

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2296 and Shewana3_2297 are separated by 399 nucleotidesShewana3_2297 and Shewana3_2298 are separated by 101 nucleotidesShewana3_2298 and Shewana3_2299 are separated by 112 nucleotides Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688 _2296 Shewana3_2297: Shewana3_2297 - ISPsy11, transposase OrfA (RefSeq), at 2,761,088 to 2,761,480 _2297 Shewana3_2298: Shewana3_2298 - integrase catalytic subunit (RefSeq), at 2,761,582 to 2,762,304 _2298 Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352 _2299 Position (kb) 2761 2762Strain fitness (log2 ratio) -1 0 1at 2760.094 kb on - strand, within Shewana3_2296at 2760.110 kb on + strand, within Shewana3_2296at 2760.165 kb on - strand, within Shewana3_2296at 2760.464 kb on - strand, within Shewana3_2296at 2760.466 kb on - strand, within Shewana3_2296at 2760.559 kb on - strand, within Shewana3_2296at 2760.860 kb on + strandat 2760.964 kb on + strandat 2760.964 kb on + strandat 2760.972 kb on - strandat 2761.050 kb on - strandat 2762.440 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,760,094 - Shewana3_2296 0.19 -0.5
2,760,110 + Shewana3_2296 0.22 -0.9
2,760,165 - Shewana3_2296 0.29 -0.4
2,760,464 - Shewana3_2296 0.70 -0.7
2,760,466 - Shewana3_2296 0.70 +0.3
2,760,559 - Shewana3_2296 0.82 -0.5
2,760,860 + +0.2
2,760,964 + -0.2
2,760,964 + -1.6
2,760,972 - +0.1
2,761,050 - +0.1
2,762,440 + -0.5

Or see this region's nucleotide sequence