Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1904

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1903 and Shewana3_1904 are separated by 73 nucleotidesShewana3_1904 and Shewana3_1905 are separated by 360 nucleotidesShewana3_1905 and Shewana3_1906 are separated by 28 nucleotides Shewana3_1903: Shewana3_1903 - restriction endonuclease (RefSeq), at 2,259,683 to 2,261,605 _1903 Shewana3_1904: Shewana3_1904 - GCN5-related N-acetyltransferase (RefSeq), at 2,261,679 to 2,262,101 _1904 Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698 _1905 Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464 _1906 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -2 -1 0 1at 2260.683 kb on - strand, within Shewana3_1903at 2260.707 kb on + strand, within Shewana3_1903at 2260.712 kb on + strand, within Shewana3_1903at 2260.894 kb on + strand, within Shewana3_1903at 2261.193 kb on + strand, within Shewana3_1903at 2261.201 kb on - strand, within Shewana3_1903at 2261.201 kb on - strand, within Shewana3_1903at 2261.201 kb on - strand, within Shewana3_1903at 2261.275 kb on + strand, within Shewana3_1903at 2261.352 kb on - strand, within Shewana3_1903at 2261.352 kb on - strand, within Shewana3_1903at 2261.365 kb on + strand, within Shewana3_1903at 2261.383 kb on - strand, within Shewana3_1903at 2261.424 kb on - strandat 2261.635 kb on + strandat 2261.636 kb on + strandat 2261.744 kb on + strand, within Shewana3_1904at 2262.050 kb on - strand, within Shewana3_1904at 2262.098 kb on - strandat 2262.161 kb on - strandat 2262.245 kb on - strandat 2262.385 kb on + strandat 2262.646 kb on - strand, within Shewana3_1905at 2262.745 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,260,683 - Shewana3_1903 0.52 -1.8
2,260,707 + Shewana3_1903 0.53 +0.4
2,260,712 + Shewana3_1903 0.54 -1.3
2,260,894 + Shewana3_1903 0.63 +0.1
2,261,193 + Shewana3_1903 0.79 -0.2
2,261,201 - Shewana3_1903 0.79 -1.0
2,261,201 - Shewana3_1903 0.79 -0.4
2,261,201 - Shewana3_1903 0.79 -1.6
2,261,275 + Shewana3_1903 0.83 -0.8
2,261,352 - Shewana3_1903 0.87 -0.4
2,261,352 - Shewana3_1903 0.87 +0.2
2,261,365 + Shewana3_1903 0.87 +0.5
2,261,383 - Shewana3_1903 0.88 +0.8
2,261,424 - -1.4
2,261,635 + +0.4
2,261,636 + -0.5
2,261,744 + Shewana3_1904 0.15 +0.3
2,262,050 - Shewana3_1904 0.88 +1.0
2,262,098 - +0.2
2,262,161 - +0.9
2,262,245 - -0.5
2,262,385 + -0.8
2,262,646 - Shewana3_1905 0.78 +0.2
2,262,745 - -1.1

Or see this region's nucleotide sequence