Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1846

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1845 and Shewana3_1846 are separated by 257 nucleotidesShewana3_1846 and Shewana3_1847 are separated by 690 nucleotides Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216 _1845 Shewana3_1846: Shewana3_1846 - aromatic amino acid transporter (RefSeq), at 2,187,474 to 2,188,661 _1846 Shewana3_1847: Shewana3_1847 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (RefSeq), at 2,189,352 to 2,190,011 _1847 Position (kb) 2187 2188 2189Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2186.516 kb on + strand, within Shewana3_1845at 2186.618 kb on - strand, within Shewana3_1845at 2186.738 kb on - strand, within Shewana3_1845at 2186.788 kb on - strand, within Shewana3_1845at 2186.939 kb on + strandat 2186.996 kb on - strandat 2187.242 kb on - strandat 2187.331 kb on - strandat 2187.376 kb on + strandat 2187.376 kb on + strandat 2187.384 kb on - strandat 2187.486 kb on - strandat 2187.521 kb on - strandat 2187.596 kb on + strand, within Shewana3_1846at 2187.690 kb on - strand, within Shewana3_1846at 2187.769 kb on - strand, within Shewana3_1846at 2187.791 kb on + strand, within Shewana3_1846at 2187.791 kb on + strand, within Shewana3_1846at 2188.081 kb on - strand, within Shewana3_1846at 2188.178 kb on + strand, within Shewana3_1846at 2188.178 kb on + strand, within Shewana3_1846at 2188.324 kb on + strand, within Shewana3_1846at 2188.523 kb on - strand, within Shewana3_1846at 2188.736 kb on - strandat 2188.903 kb on + strandat 2188.953 kb on - strandat 2189.292 kb on + strandat 2189.292 kb on + strandat 2189.332 kb on - strandat 2189.337 kb on - strandat 2189.337 kb on - strandat 2189.339 kb on - strandat 2189.575 kb on + strand, within Shewana3_1847at 2189.640 kb on + strand, within Shewana3_1847at 2189.642 kb on + strand, within Shewana3_1847

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,186,516 + Shewana3_1845 0.78 -1.3
2,186,618 - Shewana3_1845 0.81 -0.2
2,186,738 - Shewana3_1845 0.85 +0.1
2,186,788 - Shewana3_1845 0.87 -1.2
2,186,939 + -0.1
2,186,996 - +0.2
2,187,242 - +0.5
2,187,331 - +0.8
2,187,376 + -0.3
2,187,376 + +0.6
2,187,384 - -0.1
2,187,486 - +0.6
2,187,521 - +0.6
2,187,596 + Shewana3_1846 0.10 -1.0
2,187,690 - Shewana3_1846 0.18 +0.5
2,187,769 - Shewana3_1846 0.25 +0.5
2,187,791 + Shewana3_1846 0.27 +0.5
2,187,791 + Shewana3_1846 0.27 +0.4
2,188,081 - Shewana3_1846 0.51 +0.8
2,188,178 + Shewana3_1846 0.59 +0.6
2,188,178 + Shewana3_1846 0.59 -1.4
2,188,324 + Shewana3_1846 0.72 +0.2
2,188,523 - Shewana3_1846 0.88 +0.6
2,188,736 - +0.1
2,188,903 + +0.3
2,188,953 - -0.9
2,189,292 + -1.2
2,189,292 + +2.3
2,189,332 - +0.3
2,189,337 - +1.3
2,189,337 - -1.1
2,189,339 - -0.0
2,189,575 + Shewana3_1847 0.34 -4.9
2,189,640 + Shewana3_1847 0.44 -4.2
2,189,642 + Shewana3_1847 0.44 -5.7

Or see this region's nucleotide sequence