Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1644

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1642 and Shewana3_1643 are separated by 78 nucleotidesShewana3_1643 and Shewana3_1644 are separated by 136 nucleotidesShewana3_1644 and Shewana3_1645 are separated by 29 nucleotidesShewana3_1645 and Shewana3_1646 are separated by 98 nucleotides Shewana3_1642: Shewana3_1642 - hypothetical protein (RefSeq), at 1,933,481 to 1,934,563 _1642 Shewana3_1643: Shewana3_1643 - DNA replication initiation factor (RefSeq), at 1,934,642 to 1,935,352 _1643 Shewana3_1644: Shewana3_1644 - transposase (RefSeq), at 1,935,489 to 1,935,884 _1644 Shewana3_1645: Shewana3_1645 - integrase catalytic subunit (RefSeq), at 1,935,914 to 1,936,717 _1645 Shewana3_1646: Shewana3_1646 - hypothetical protein (RefSeq), at 1,936,816 to 1,938,744 _1646 Position (kb) 1935 1936Strain fitness (log2 ratio) -2 -1 0 1at 1934.588 kb on + strandat 1934.588 kb on + strandat 1934.693 kb on + strandat 1934.768 kb on + strand, within Shewana3_1643at 1934.933 kb on - strand, within Shewana3_1643at 1934.960 kb on + strand, within Shewana3_1643at 1935.031 kb on - strand, within Shewana3_1643at 1935.170 kb on + strand, within Shewana3_1643at 1935.170 kb on + strand, within Shewana3_1643at 1935.170 kb on + strand, within Shewana3_1643at 1935.170 kb on + strand, within Shewana3_1643at 1935.346 kb on + strandat 1935.360 kb on + strandat 1936.821 kb on + strandat 1936.857 kb on + strandat 1936.865 kb on - strandat 1936.865 kb on - strandat 1936.865 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,934,588 + +0.4
1,934,588 + -0.2
1,934,693 + -0.3
1,934,768 + Shewana3_1643 0.18 -1.9
1,934,933 - Shewana3_1643 0.41 -0.3
1,934,960 + Shewana3_1643 0.45 -0.4
1,935,031 - Shewana3_1643 0.55 -0.9
1,935,170 + Shewana3_1643 0.74 -0.5
1,935,170 + Shewana3_1643 0.74 -1.6
1,935,170 + Shewana3_1643 0.74 -1.0
1,935,170 + Shewana3_1643 0.74 -0.3
1,935,346 + -1.0
1,935,360 + +0.2
1,936,821 + +0.2
1,936,857 + +1.4
1,936,865 - +0.5
1,936,865 - -2.3
1,936,865 - -0.1

Or see this region's nucleotide sequence