Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1298

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1296 and Shewana3_1297 are separated by 137 nucleotidesShewana3_1297 and Shewana3_1298 are separated by 113 nucleotidesShewana3_1298 and Shewana3_1299 are separated by 0 nucleotidesShewana3_1299 and Shewana3_1300 are separated by 245 nucleotides Shewana3_1296: Shewana3_1296 - RND family efflux transporter MFP subunit (RefSeq), at 1,509,711 to 1,510,832 _1296 Shewana3_1297: Shewana3_1297 - TetR family transcriptional regulator (RefSeq), at 1,510,970 to 1,511,590 _1297 Shewana3_1298: Shewana3_1298 - hypothetical protein (RefSeq), at 1,511,704 to 1,512,651 _1298 Shewana3_1299: Shewana3_1299 - hypothetical protein (RefSeq), at 1,512,652 to 1,513,212 _1299 Shewana3_1300: Shewana3_1300 - hypothetical protein (RefSeq), at 1,513,458 to 1,513,937 _1300 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -2 -1 0 1at 1510.742 kb on - strandat 1510.899 kb on + strandat 1510.899 kb on + strandat 1510.899 kb on + strandat 1510.918 kb on + strandat 1510.918 kb on + strandat 1510.921 kb on - strandat 1510.966 kb on + strandat 1510.973 kb on + strandat 1511.129 kb on + strand, within Shewana3_1297at 1511.214 kb on + strand, within Shewana3_1297at 1511.304 kb on - strand, within Shewana3_1297at 1511.366 kb on + strand, within Shewana3_1297at 1511.463 kb on + strand, within Shewana3_1297at 1511.569 kb on + strandat 1511.601 kb on - strandat 1511.603 kb on + strandat 1511.696 kb on + strandat 1511.808 kb on + strand, within Shewana3_1298at 1511.909 kb on + strand, within Shewana3_1298at 1512.037 kb on + strand, within Shewana3_1298at 1512.050 kb on - strand, within Shewana3_1298at 1512.192 kb on + strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.202 kb on - strand, within Shewana3_1298at 1512.844 kb on - strand, within Shewana3_1299at 1512.962 kb on + strand, within Shewana3_1299at 1513.029 kb on + strand, within Shewana3_1299at 1513.136 kb on + strand, within Shewana3_1299at 1513.338 kb on - strandat 1513.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,510,742 - -1.8
1,510,899 + +1.0
1,510,899 + -0.4
1,510,899 + +0.1
1,510,918 + +0.8
1,510,918 + -1.4
1,510,921 - -0.0
1,510,966 + +0.4
1,510,973 + +0.2
1,511,129 + Shewana3_1297 0.26 -0.1
1,511,214 + Shewana3_1297 0.39 -2.5
1,511,304 - Shewana3_1297 0.54 -0.1
1,511,366 + Shewana3_1297 0.64 +0.4
1,511,463 + Shewana3_1297 0.79 +0.3
1,511,569 + +0.5
1,511,601 - -0.4
1,511,603 + +0.1
1,511,696 + +0.1
1,511,808 + Shewana3_1298 0.11 -1.0
1,511,909 + Shewana3_1298 0.22 -1.2
1,512,037 + Shewana3_1298 0.35 +0.4
1,512,050 - Shewana3_1298 0.36 +0.5
1,512,192 + Shewana3_1298 0.51 +0.1
1,512,200 - Shewana3_1298 0.52 +0.2
1,512,200 - Shewana3_1298 0.52 +0.1
1,512,202 - Shewana3_1298 0.53 +0.5
1,512,844 - Shewana3_1299 0.34 -0.1
1,512,962 + Shewana3_1299 0.55 +0.2
1,513,029 + Shewana3_1299 0.67 +0.4
1,513,136 + Shewana3_1299 0.86 +0.5
1,513,338 - -0.0
1,513,340 + -0.6

Or see this region's nucleotide sequence